Gene Information

Name : yscS (YEP0029)
Accession : YP_001004083.1
Strain :
Genome accession: NC_008791
Putative virulence/resistance : Virulence
Product : putative type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 23243 - 23509 bp
Length : 267 bp
Strand : +
Note : Previously sequenced: Yersinia enterocolitica YscS SWALL:AAD16829 (EMBL:AF102990) (88 aa) fasta scores: E(): 1.5e-30, 100 38d in 88 aa. Also highly similar to Yersinia pestis, and Yersinia pseudotuberculosis yop proteins translocation protein S YscS or yp

DNA sequence : 
ATGAGTCAAGGTGACATAATTCACTTCACCAGTCAGGCATTATGGCTGGTGCTAGTCCTTTCAATGCCGCCGGTGTTAGT
GGCTGCGGTGGTAGGAACTTTGGTATCTTTAGTACAAGCTTTAACGCAAATCCAAGAGCAAACTCTGGGCTTCGTTATCA
AATTGATCGCTGTGGTGGTCACACTGTTTGCTACCGCCTCGTGGCTTGGTAATGAATTGCACAGTTTTGCAGAAATGACC
ATGATGAAGATACAAGGCATAAGATGA

Protein sequence : 
MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMT
MMKIQGIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-19 79
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 4e-08 52
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 4e-08 52
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 4e-08 52
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-08 52
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 3e-08 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscS YP_001004083.1 putative type III secretion protein VFG0395 Protein 7e-25 100
yscS YP_001004083.1 putative type III secretion protein VFG0187 Protein 2e-11 75
yscS YP_001004083.1 putative type III secretion protein VFG0043 Protein 5e-08 56
yscS YP_001004083.1 putative type III secretion protein VFG0520 Protein 1e-08 52