Gene Information

Name : yscQ (YEP0027)
Accession : YP_001004081.1
Strain :
Genome accession: NC_008791
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 21668 - 22591 bp
Length : 924 bp
Strand : +
Note : Previously sequenced: Yersinia enterocolitica YscQ SWALL:Q9ZA78 (EMBL:AF102990) (307 aa) fasta scores: E(): 2.9e-123, 100 38d in 307 aa. Also highly similar to Yersinia pseudotuberculosis Yop proteins translocation protein Q YscQ SWALL:YSCQ_YERPS (SWALL:P

DNA sequence : 
ATGAGTTTGTTAACCTTGCCACAAGCCAAATTAAGTGAACTGTCGCTACGTCAACGGCTCAGCCATTATCGACAAAACTA
CTTGTGGGAAGAGGGAAAACTCGAACTTACCGTCTCTGAGCCTCCTTCGTCTTTGAACTGTATATTACAGTTACAATGGA
AGGGAACGCACTTCACGCTCTACTGTTTTGGCGATGATCTGGCTAACTGGTTAACCCCCGACTTACTAGGGGCTCCATTC
TCTACTCTGCCGAAAGAGTTGCAACTTGCGCTGTTGGAACGCCAGACAGTTTTCCTGCCGAAACTGGTCTGTAATGATAT
AGCGACAGCGTCTCTTTCTGTCACGCAACCTCTGTTGAGTTTGCGGCTGTCCCGAGATAATGCGCATATCTCCTTCTGGC
TAACCTCAGCTGAGGCTCTGTTCGCTCTGTTACCCGCACGACCCAATTCTGAGCGCATACCTTTGCCTATCCTTCTTTCT
TTGCGTTGGCACAAAGTATACCTGACTCTAGATGAGGTTGATTCCCTTCGATTAGGTGATGTGTTGTTGGCCCCTGAGGG
GAGTGGGCCTAATTCGCCAGTACTCGCCTATGTTGGTGAGAACCCTTGGGGCTACTTTCAATTACAATCAAATAAATTGG
AGTTTATCGGTATGAGTCATGAATCTGACGAACTTAACCCCAAACCATTGACCGATTTGAACCAACTTCCGGTTCAAGTT
AGCTTTGAAGTGGGGCGGCAAATCTTAGATTGGCACACACTCACTAGCCTGGAGCCGGGTTCTCTTATTGATCTTACAAC
ACCTGTTGATGGTGAAGTGCGCTTGCTGGCTAACGGCCGGTTGCTTGGACATGGTCGATTGGTCGAGATCCAAGGACGCC
TCGGGGTTCGAATTGAACGCCTGACAGAGGTTACGATTTCATGA

Protein sequence : 
MSLLTLPQAKLSELSLRQRLSHYRQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGDDLANWLTPDLLGAPF
STLPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILLS
LRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPKPLTDLNQLPVQV
SFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscQ AAO18041.1 LscQ Virulence TTSS locus Protein 2e-61 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscQ YP_001004081.1 type III secretion system protein VFG0393 Protein 8e-137 99
yscQ YP_001004081.1 type III secretion system protein VFG0189 Protein 1e-45 42