Gene Information

Name : yscO (YEP0025)
Accession : YP_001004079.1
Strain :
Genome accession: NC_008791
Putative virulence/resistance : Virulence
Product : type III secretion system translocation protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 19846 - 20310 bp
Length : 465 bp
Strand : +
Note : Similar to Yersinia enterocolitica type III secretion system translocation protein YscO SWALL:Q93KT7 (EMBL:AF336309) (154 aa) fasta scores: E(): 9.7e-51, 100 id in 154 aa, and to Yersinia pseudotuberculosis Yop proteins translocation protein O YscO SWALL:

DNA sequence : 
ATGATACGCCGCCTGCACCGGGTTAAAGTTTTACGCGTTGAACGTGCGGAGCAAGCCATCAAGACTCAGCAAGCTTGCTT
GCAGGCAGCTCATCGACGTCATCAAGAGGCGGTGCAAACCAGTCAGGATTACCATTTGTGGCGTATTGATGAGGAGCAAC
GTCTATTTGATCAGCGAAAAAACACCACACTGAATTGTAAAGATTTGGAGAAATGGCAGCGACAAATAGCGTCGCTACGT
GAAAAGGAGGCCAATTATGAACTGGAGTGCGCCAAATTATTGGAACGTTTAGCCAATGAGCGTGAGCGCCTTACGTCATG
CCAAAAGACGCTGCAACAGGCTCGTCATAAGGAAAATAAGTTTCTCGAGCTAGTGCGACGAGAAGATGAAGATGAGCTAA
ATCAACAACATTATCAGGAAGAACAAGAACAAGAAGAGTTTCTACAGCATCACAGGAACGCCTAA

Protein sequence : 
MIRRLHRVKVLRVERAEQAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRKNTTLNCKDLEKWQRQIASLR
EKEANYELECAKLLERLANERERLTSCQKTLQQARHKENKFLELVRREDEDELNQQHYQEEQEQEEFLQHHRNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscO AAO18043.1 LscO Virulence TTSS locus Protein 5e-20 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscO YP_001004079.1 type III secretion system translocation protein VFG0391 Protein 1e-42 98