Gene Information

Name : sycD (YEP0014)
Accession : YP_001004068.1
Strain :
Genome accession: NC_008791
Putative virulence/resistance : Virulence
Product : yopB/D chaperone/regulatory protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 11776 - 12282 bp
Length : 507 bp
Strand : -
Note : Previously sequenced: Yersinia enterocolitica yopB/D chaperone/regulatory protein SycD SWALL:AAK69212 (EMBL:AF336309) (168 aa) fasta scores: E(): 4.8e-67, 100 id in 168 aa. Also highly similar to Yersinia pseudotuberculosis low calcium response locus prot

DNA sequence : 
ATGCAACAAGAGACGACAGACACTCAAGAATACCAGCTGGCAATGGAATCCTTCCTAAAAGGAGGGGGAACTATCGCCAT
GCTCAACGAAATTTCAAGTGACACTTTAGAGCAACTCTACTCTCTTGCGTTTAACCAATACCAGTCAGGAAAATACGAGG
ATGCTCACAAGGTCTTTCAAGCTCTCTGTGTGCTAGACCACTATGATTCACGTTTCTTTTTAGGGCTAGGCGCTTGTCGT
CAAGCCATGGGGCAATACGACTTAGCGATTCATAGCTACAGCTATGGCGCCATAATGGATATAAAAGAACCTCGTTTTCC
GTTTCATGCTGCCGAATGTTTACTGCAAAAGGGAGAGCTTGCTGAAGCAGAAAGTGGCTTGTTCTTGGCTCAAGAGCTTA
TCGCAGACAAACCTGAGTTTAAGGAGCTTTCCACCCGAGTTAGCTCAATGTTAGAAGCAATTAAATTGAAAAAGGAGATG
GAACATGAGTGCGTTGATAACCCATGA

Protein sequence : 
MQQETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACR
QAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKPEFKELSTRVSSMLEAIKLKKEM
EHECVDNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssH AAO18054.1 LssH Virulence TTSS locus Protein 3e-48 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sycD YP_001004068.1 yopB/D chaperone/regulatory protein VFG0380 Protein 1e-74 99
sycD YP_001004068.1 yopB/D chaperone/regulatory protein VFG0202 Protein 5e-45 58