Gene Information

Name : yopD (YEP0012)
Accession : YP_001004066.1
Strain :
Genome accession: NC_008791
Putative virulence/resistance : Virulence
Product : translocator protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 9654 - 10574 bp
Length : 921 bp
Strand : -
Note : Previously sequenced: Yersinia enterocolitica YopD translocator protein SWALL:YOPD_YEREN (SWALL:P37132) (306 aa) fasta scores: E(): 4e-96, 98.36 38d in 306 aa, and to Yersinia pestis YopD homolog or Ypcd1.28C SWALL:O68699 (EMBL:AF053946) (306 aa) fasta sc

DNA sequence : 
ATGACAATAAATATCAAGACAGACAGCCCAATTATCACGACCGGTTCACAGATTGATGCCATCACTACAGAGACAGTCGG
GCAAAGCGGTGAGGTTAAAAAAACAGAAGACACCCGTCATGAAGCACAAGCAATAAAGAGTAGCGAGGCAAGCTTATCTC
GGTCACAAGTGCCTGAATTGATCAAACCGAGTCAGGGAATCAATGTTGCATTACTGAGTAAAAGCCAGGGAGATCTTAAT
GGTACTTTAAGTATCTTGTTGTTGCTGTTGGAACTGGCACGTAAAGCGCGAGAAATGGGTTTGCAACAAAGGGATATAGA
AAATAAAGCTGCTATTACTGCCCAAAAGGAGCAGGTAGCGGAGATGGTCAGCGGTGCAAAACTGATGATCGCCATGGCGG
TGGTGTCTGGCATCATGGCTGCTACTTCTACGGTTGCTAGTGCTTTTTCTATAGCGAAAGAGGTGAAAATAGTTAAACAG
GAACAAATTCTAAACAGTAATATTGCTGGCCGCGATCAACTTATTGATACAAAAATGCAACAAATGAGTAACACCAGTGA
TAAAGCGGTAAGCAGAGAGGATATCGGGAGAATATGGAAACCAGAGCAGGTAGCGGATCAAAATAAGCTGGCATTATTGG
ATAAAGAATTCAGAATGACCGACTCAAAAGCCAATGCGTTTAATGCCGCAACGCAGCCGTTAGGACAAATGGCAAACAGT
GCGATTCAAGTTCATCAAGGGTATTCTCAAGCCGAGGTCAAAGAGAAAGAAGTCAATGCAAGTATTGCTGCCAACGAGAA
GCAAAAAGCCGAAGAGGCGATGAACTATAATGATAACTTTATGAAAGATGTCCTGCGCTTGATTGAACAATATGTTAGCA
GTCATACTCACGCCATGAAAGCCGCTTTTGGTGTTGTCTGA

Protein sequence : 
MTINIKTDSPIITTGSQIDAITTETVGQSGEVKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLN
GTLSILLLLLELARKAREMGLQQRDIENKAAITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQ
EQILNSNIAGRDQLIDTKMQQMSNTSDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANS
AIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopD AAO18056.1 LopD Virulence TTSS locus Protein 1e-44 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yopD YP_001004066.1 translocator protein VFG0378 Protein 5e-130 98