Gene Information

Name : CJJ81176_pTet0039 (CJJ81176_pTet0039)
Accession : YP_001004043.1
Strain :
Genome accession: NC_008790
Putative virulence/resistance : Virulence
Product : cmgB11
Function : -
COG functional category : N : Cell motility
COG ID : COG0630
EC number : -
Position : 31246 - 32238 bp
Length : 993 bp
Strand : +
Note : identified by match to protein family HMM PF00437; match to protein family HMM TIGR02788

DNA sequence : 
ATGTCAATAACGCTAGATAAATATACTCAAAAATTTTTTGGAGAATTTTTAAAAGATGATAATATCAATGAAATCTGCTA
TAACGGCGATAATAAAATTTGGGTACAAAACTCTAAAGGATTATGGGAATGTATAGATACTAAACTTGATTTTGAACAAG
CTGGACATTTTGCAACTGCTTCAGCCTCATTCAAAAAAGATAAAATAGATGTATCACGCCCTATTCTTAGTTGTATTCTA
GTAGGTGGAGAGCGTATGCAAATTGTTATTCCTCCTGCTACAAAAAGCGAACACATTTCAATTACTATTAGAAAGCCAAG
CAAAACTCGCTTTAAAATGGAAGATCATATTAAAAGCGGACTTTTTGAAGATTTAAATCCTGATGATAAGAATAAAATCA
AACCAAGCGATGAAGAATTAATCAAGCTATATGAAGCAAGAGATTATCAAAATTTTATATCCAAAGCTGTTAGCTATGGT
AAAAATATTATTATCGCTGGTGAAACAGGAAGCGGTAAAACTACCTTTATGAAAACTCTTATTGATTTTATAAGCCTTGA
TGATAGGATTATCACAATAGAAGATGTTGAAGAAATCAAATTCTATGAACACAAAAATTTCGTGCAATTATTCTATCCTA
GCGAAGCAAAAAGTACAGATTTTTTAAATTCTGCAACACTTTTAAAATCTTGTTTAAGAATGAAGCCTGATAGGATTTTA
CTAGCAGAGCTTAGAGGTGCTGAAACTTATGATTTTATTAATGTTTTAGCTAGTGGTCATGGTGGAAGTATCACAAGTTG
CCATGCAGGAAGCCCCGAAGAAACATTTACACGACTTGCTTTAATGACTCTACAAAATCCACAAGGTCAATGCGTGCCTT
TTGAAATTATCCAAAAAACACTTAAAGACTTAATAGATATTGTCGTGCATATCCATGCCCATCATGGAAAAAGGCGTATT
AGCGGCATTTATTTTAAAGAAATGGAGAGATAA

Protein sequence : 
MSITLDKYTQKFFGEFLKDDNINEICYNGDNKIWVQNSKGLWECIDTKLDFEQAGHFATASASFKKDKIDVSRPILSCIL
VGGERMQIVIPPATKSEHISITIRKPSKTRFKMEDHIKSGLFEDLNPDDKNKIKPSDEELIKLYEARDYQNFISKAVSYG
KNIIIAGETGSGKTTFMKTLIDFISLDDRIITIEDVEEIKFYEHKNFVQLFYPSEAKSTDFLNSATLLKSCLRMKPDRIL
LAELRGAETYDFINVLASGHGGSITSCHAGSPEETFTRLALMTLQNPQGQCVPFEIIQKTLKDLIDIVVHIHAHHGKRRI
SGIYFKEMER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
virB11_1 NP_223192.1 cag island protein, DNA transfer protein Virulence cag PAI Protein 2e-55 46
virB11-2 YP_005774544.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-55 46
virB11-2 YP_005777269.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-55 46
HP0525 BAD13913.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-56 46
HP0525 BAD13886.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-55 45
HP0525 BAD13831.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-55 45
HP0525 AAR03859.1 VirB11-like protein Virulence cag PAI Protein 1e-55 45
HP0525 BAD13941.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-55 45
HP0525 BAD14024.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-55 45
HP0525 BAD13996.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-55 45
cag-alfa AAF80196.1 Cag-alfa Virulence cag PAI Protein 2e-55 45
HP0525 AAR03888.1 VirB11-like protein Virulence cag PAI Protein 2e-55 45
virB11-2 YP_005779065.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-55 45
HP0525 AAR03948.1 VirB11-like protein Virulence cag PAI Protein 2e-55 45
HP0525 BAD13777.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-55 45
virB11-2 YP_005775728.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-55 45
virB11 AGC69807.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-55 45
HP0525 BAD13804.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-55 45
HP0525 NP_207321.1 virB11-like protein Virulence cag PAI Protein 2e-55 45
HP0525 AAR03917.1 VirB11-like protein Virulence cag PAI Protein 2e-55 45
HP0525 BAD14050.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-55 45
virB11-4 YP_003728739.1 cag pathogenicity island protein alpha Virulence cag PAI Protein 2e-55 45
HP0525 BAD13968.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-54 44
HP0525 BAD13858.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-54 44
unnamed AAP70289.1 Pilx11/VirB11-like protein Not tested HPI Protein 5e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CJJ81176_pTet0039 YP_001004043.1 cmgB11 VFG2218 Protein 6e-62 54
CJJ81176_pTet0039 YP_001004043.1 cmgB11 VFG0285 Protein 1e-55 45