Gene Information

Name : Hhal_0616 (Hhal_0616)
Accession : YP_001002203.1
Strain : Halorhodospira halophila SL1
Genome accession: NC_008789
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 694911 - 695609 bp
Length : 699 bp
Strand : -
Note : PFAM: Integrase, catalytic region; KEGG: mxa:MXAN_1715 transposase orfB, IS3 family

DNA sequence : 
GTGAATCGGGCCTATTACAGCACTGCCACGCTTTGCGGGGTACTGGGCGTCTCCCCCAGCGGTTTCTACGCGTGGCGCAA
TCGCGGCCGCTCAGTCCGTGCGGCGACAGACGCCGCTCTGACGGAGCGGATCGAGGCGATCCACGACAATTCTCGCGGCA
CATACGGTGCACCGCGGATTCATGCCGAGCTCCGGGATGAAGGCTGGCGCTTCTCCGCAAAGCGAGTCGCCCGCCTGATG
CGGGCCGCTGGCCTGCAAGGCGTCAGCCGCCGCAAGGGAACGATTGCGACGATTCCGGACCGGGACAGCGAAGACAAGCC
GGATCTCGTCGAGCGGGACTTCACCGCAAATGGGCCAGACCAGCTCTATGTCGCGGATATCACGTACGTTCCAACGTGGG
CGGGATTCCTGTACCTCGCTGTCGTCATCGACGTGTTCTCACGGCGTGTCGTGGGCTGGTCAATGGCTGGCCACATGCGC
ACGGAGATCGTCCTCGACGCCCTCGAGATGGCGATCTGGCAGCGCCGTCCAGAGGCCGTCATACACCACTCGGACCGTGG
GTCGCAGTACACATCCATTGCCTTCGGCAACCGCTGCCGGGAGGCCGGGGTGCGCCCTTCGATGAGTTCGGTGGGCGACT
GTTACGACAACTCGATGGCCGAGAGTGGTCTTGCCCACCAACCGTGGACACCTCAATAG

Protein sequence : 
MNRAYYSTATLCGVLGVSPSGFYAWRNRGRSVRAATDAALTERIEAIHDNSRGTYGAPRIHAELRDEGWRFSAKRVARLM
RAAGLQGVSRRKGTIATIPDRDSEDKPDLVERDFTANGPDQLYVADITYVPTWAGFLYLAVVIDVFSRRVVGWSMAGHMR
TEIVLDALEMAIWQRRPEAVIHHSDRGSQYTSIAFGNRCREAGVRPSMSSVGDCYDNSMAESGLAHQPWTPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-34 50
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-37 46
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-38 46
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-38 46
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-38 46
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-38 46
CDCE8392_1774 YP_005134308.1 transposase-like protein Not tested Not named Protein 7e-34 45
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-36 45
Z1198 NP_286733.1 transposase Not tested TAI Protein 5e-37 45
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-37 45
Z1638 NP_287141.1 transposase Not tested TAI Protein 5e-37 45
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-37 45
Z1221 NP_286756.1 transposase Not tested TAI Protein 5e-37 45
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-37 45
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-36 45
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-36 45
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-36 45
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-34 44
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 8e-36 44
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-34 43
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 8e-35 42
M5005_Spy_0167 YP_281531.1 transposase Not tested Not named Protein 8e-27 41
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-33 41
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-33 41
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 5e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hhal_0616 YP_001002203.1 integrase catalytic subunit VFG1602 Protein 8e-35 43