Gene Information

Name : Hhal_1533 (Hhal_1533)
Accession : YP_001003102.1
Strain : Halorhodospira halophila SL1
Genome accession: NC_008789
Putative virulence/resistance : Resistance
Product : Fis family two component sigma-54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1665630 - 1666979 bp
Length : 1350 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: aeh:Mlg_0157 two component, sigma54 specific, transcriptional regulator, fis family

DNA sequence :
TTGGGGCACGCGAACCACCTGCTGATCGTCGAGGATGACAAGGGGCTCCAGGAACAGCTGCGCTGGTGTTTCGACGGCTA
TGAGATCGTTCCGGCCTTCGACCGCGCGGAGGCTGTTGCTTTGGCGCGGCGTTACGAGCCCGAGCTCGTCCTGCTTGATC
TCGGGCTCCCCCCGGATCCGGCCAATGCCAGCGAGGGGCTGGCGGCCCTGCAAGAGGTGCTCGCCGAGGCGCCCGAGAGC
AAGGTGATCGTGGTCACCGGTAACGATGACCGGGAGAATGCGCTCAAGGCCGTCGCGCTCGGCGCCTACGACTTCTACGG
GAAACCGGTGGATCCGGATACCCTGCGACTGCTAGTGGATCGAGCCGCACAGCTTTATAGCCTCGAGGCGGAGAACCGTC
GTCTGGCACAACAATCGGCATCGCCGCTGGAGGGGTTCCTTAGCTCGGACCCGGGGGCGCTGCAGGTCTGCCGGATGGTC
GAGCGCGTCGCCCCGGCGGATGCTACGGTCCTGCTGCGCGGGGAGAGCGGTACCGGCAAGGAGATCCTCGCCCGTGCGGT
TCATCGGCTCAGTGGCCGCCGTGAGCAGCGTTTCGTTGCCATCAACTGCGCCGCGATCCCGGAGAATCTCCTCGAGAGTG
AGCTCTTCGGGTATGAGAAGGGTGCTTTTACCGGGGCCAACCGCCAGACCATTGGCAAGATCGAATACGCCAGTGGCGGG
ACGCTGTTCCTCGACGAGATCGGCGACTTGCCCTTGAGTCTTCAGGCCAAGCTGCTTCGCTTTCTGCAAGAGCGGACCAT
CGAGCGCCTCGGGGGCCGGCAATCGATCGAGGTGGACGTGCGGGTGGTTTGTGCCACCCATCGCGATCTGGCGGAGATGA
TTCGCGACGGCGGCTTCCGCGAGGATCTTTTCTACCGCGTTGCCGAGATCGAGCTGACCATACCGCCGCTGCGCGAGCGT
CCTGGTGACGCCGTTCTCGTGGCCCACGCCCTGCTCGATCGCTTCGCCCGCGAGCAGCGCCAGCCGCGTCGCCTGTTGAC
CCCGGAGGCTATCGACGCCATCGAGGCCTACCCGTGGCCCGGCAACGTGCGGGAGATGGAGAACGTCATCCGCCGGGCGG
TGATTATGGCCGATGGCAAAAAGATTGCTGCGGAGGATCTCGCGCTGGAAGTACCGGAGGGTGGTGGCGAGGACCGGCTG
CGCCTCAAGGATGCCCGGGAGCAGGCCGAGTACCAGGCGGTCGTCCGTGCGCTAAGCCGCTCGAATGGGAATATCGCGCA
GGCCGCCGGTCTGCTGGGGATTACTCGGCCGACCTTGTACACCCTCATGGATAAATTCGCCCTGCGCTGA

Protein sequence :
MGHANHLLIVEDDKGLQEQLRWCFDGYEIVPAFDRAEAVALARRYEPELVLLDLGLPPDPANASEGLAALQEVLAEAPES
KVIVVTGNDDRENALKAVALGAYDFYGKPVDPDTLRLLVDRAAQLYSLEAENRRLAQQSASPLEGFLSSDPGALQVCRMV
ERVAPADATVLLRGESGTGKEILARAVHRLSGRREQRFVAINCAAIPENLLESELFGYEKGAFTGANRQTIGKIEYASGG
TLFLDEIGDLPLSLQAKLLRFLQERTIERLGGRQSIEVDVRVVCATHRDLAEMIRDGGFREDLFYRVAEIELTIPPLRER
PGDAVLVAHALLDRFAREQRQPRRLLTPEAIDAIEAYPWPGNVREMENVIRRAVIMADGKKIAAEDLALEVPEGGGEDRL
RLKDAREQAEYQAVVRALSRSNGNIAQAAGLLGITRPTLYTLMDKFALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 6e-54 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 6e-54 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hhal_1533 YP_001003102.1 Fis family two component sigma-54 specific transcriptional regulator BAC0467 Protein 1e-64 42