|
Name : Hhal_1392 (Hhal_1392) Accession : YP_001002961.1 Strain : Halorhodospira halophila SL1 Genome accession: NC_008789 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1503047 - 1504324 bp Length : 1278 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATCGACCCCAAACTGCTGCGTAACGATCCCGAAGGCGTCGCCGCCAACCTGGCGCGGCGCGGATTCGAATTCGATGC GGCCGGCTACCGGGCGTTGGATGCTCGGCGGCGTGACCTTCAGCAGGAGACGCAGACCCTGCAGAACCAGCGCAACGAGC GCTCCAAGGAGATCGGAGCGGCCAAGAAGCGCGGTGAGGACATCGAGCCGCTGAAGGCGGAGGTGGGTCGCATCGCCGAG CGGCTGAGCGAGGCCGAAACGGCCCTGAACGAAGTGCAGGAGCAGCTCGATGAGCTGCATCTGGGCCTGCCCAATCTGCT CGATGAGCAGGTCCCCGATGGTCAGGACGAGGAAGACAACCGCGTACTTCGCCAGTGGGGCGGGATCCCGGCACTGTCCT TCAAGCCGCGGGATCACGTCGACCTCGGCGAGCTGCTGGGCGGGATGGATTTTGAGGCCGCCGCGCGTATTGCCGGGAGC CGCTTCGTCACCCTCAGCGGCCCGCTGGCGCGTCTGCACCGCGCCCTGACCCAGTTCATGCTCGACCTGCACTGCCGGGA GCACGGCTACACCGAGGTCTATGTCCCGTATCTGGTCAATGCCCGCTCCCTGACCGGTACCGGGCAGCTACCCAAGTTCG AGGACGACCTGTTTCGCGTCGAGCACGATCCGAGCCTTTATCTCGCCCCGACGGCCGAGGTGCCGGTGACCAACCTGGTC CAGGAGCGGATCGTCGAGGACGCCGACATGCCGTTGCGTTTCGTCTGCCATACGCCGTGCTTTCGCTCCGAGGCCGGCAG CTACGGCAAGGACACGCGCGGCATGATCCGTCAGCACCAGTTCGAGAAGGTCGAGCTGGTGCAGGTCGTGCGCCCCGGCG AGTCCTGGGATGCCCTGGAGGCTCTCACCGGCCACGCCGAGACCGTACTGCGCCGCTTGGCGCTGCCCTACCGGGTGGTC TCGCTGTGTGGCGGGGACATCGGCTTCTCGGCGGCGCGCACCTACGACCTGGAGGTGTGGCTGCCCGCCCAGGAGCGCTA CCGCGAGATCTCCTCCTGCTCGAACTTCACCGACTTCCAGGCCCGCCGACTGCAGGCGCGCTGGCGCAATCCGGAGACCG GCAAGCCGGAGCCCGTGCACACCCTCAACGGCTCCGGACTGGCGGTGGGCCGCTGCCTGGTGGCGATCCTGGAGAACTAT CAGGAGGCCGACGGCCGGGTGAACGTCCCCGAGGCCCTGGTCCCGTACATGGGTGGGCAACGGCTCCTGGGGGACTGA Protein sequence : MIDPKLLRNDPEGVAANLARRGFEFDAAGYRALDARRRDLQQETQTLQNQRNERSKEIGAAKKRGEDIEPLKAEVGRIAE RLSEAETALNEVQEQLDELHLGLPNLLDEQVPDGQDEEDNRVLRQWGGIPALSFKPRDHVDLGELLGGMDFEAAARIAGS RFVTLSGPLARLHRALTQFMLDLHCREHGYTEVYVPYLVNARSLTGTGQLPKFEDDLFRVEHDPSLYLAPTAEVPVTNLV QERIVEDADMPLRFVCHTPCFRSEAGSYGKDTRGMIRQHQFEKVELVQVVRPGESWDALEALTGHAETVLRRLALPYRVV SLCGGDIGFSAARTYDLEVWLPAQERYREISSCSNFTDFQARRLQARWRNPETGKPEPVHTLNGSGLAVGRCLVAILENY QEADGRVNVPEALVPYMGGQRLLGD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-93 | 50 |
