Gene Information

Name : Hhal_1251 (Hhal_1251)
Accession : YP_001002828.1
Strain : Halorhodospira halophila SL1
Genome accession: NC_008789
Putative virulence/resistance : Virulence
Product : lipoprotein releasing system ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1358017 - 1358733 bp
Length : 717 bp
Strand : -
Note : KEGG: cvi:CV2963 probable ATP-binding component, ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAATGAGGCCGAGGTGGTCATCGATTGTCGGCGGGTGGCCAAACACTTCAGCGAGGGCCCACAGGAGGTTGAGGTCCT
CAGCGGGGTGGATCTCAGCGTGCGCGCCGGCGAGCAGGTGGCCGTGGTGGGGCCGTCCGGTTCTGGCAAGAGCACCTTGC
TGCACATCCTCGGGGGGCTCGATACCCCCTCCGCGGGCGAGGTGCAGGTCGCCGGCGAGCGCATCTACACCCTGAAGCAG
GCAGCGCGCGGGCGCCTGCGGAACCAGGCCCTGGGCTTCGTTTACCAGTTCCACCACCTGCTGCCGGAGTTCACCGCGCT
GGAAAACGTCGCGATGCCACTGCTCATCCGTCGGGTGTCGGCTGCACAGGCCAGGACGGCCGCGGCCGAGCTGCTGACGC
GCATCGGCCTGGAGGCGCGCATGAGCCATCGCCCGTCGGAACTCTCCGGCGGGGAGCGGCAGCGGGTAGCCATTGCCCGG
GCGCTGGTGACGCGACCGCAGTGCATCCTCGCCGACGAGCCCACCGGCAACCTGGACCGGCATACCGCCGAGCGGGTTTT
CGGCATGCTGCAGAGCCTCAACCAGGAGTTCGGGACCGCGCTGGTCTTCGTGACCCACGACCTGGATCTGGCCCACCGCA
CCGAGCGCGTCTACAAGCTCGAGGATGGCTGCCTGCAAGGGCAGGGCGCCCAGGCGGCGGAGGCCGCCTCGAGTTAA

Protein sequence : 
MNEAEVVIDCRRVAKHFSEGPQEVEVLSGVDLSVRAGEQVAVVGPSGSGKSTLLHILGGLDTPSAGEVQVAGERIYTLKQ
AARGRLRNQALGFVYQFHHLLPEFTALENVAMPLLIRRVSAAQARTAAAELLTRIGLEARMSHRPSELSGGERQRVAIAR
ALVTRPQCILADEPTGNLDRHTAERVFGMLQSLNQEFGTALVFVTHDLDLAHRTERVYKLEDGCLQGQGAQAAEAASS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-30 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-30 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hhal_1251 YP_001002828.1 lipoprotein releasing system ATP-binding protein NC_008702.1.4606598. Protein 4e-35 48
Hhal_1251 YP_001002828.1 lipoprotein releasing system ATP-binding protein NC_012469.1.7686878. Protein 1e-36 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hhal_1251 YP_001002828.1 lipoprotein releasing system ATP-binding protein VFG2059 Protein 1e-11 41