|
Name : CJJ81176_0780 (CJJ81176_0780) Accession : YP_001000448.1 Strain : Campylobacter jejuni 81-176 Genome accession: NC_008787 Putative virulence/resistance : Virulence Product : type I site-specific deoxyribonuclease chain R Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 708487 - 711402 bp Length : 2916 bp Strand : + Note : identified by match to protein family HMM PF04313; match to protein family HMM PF04851 DNA sequence : ATGACCAACTACAAAGAAAAAGATTTAGAAAATTTCATAGAATCATATTTGTTAGAAAACCATGCCTATATCAAAAGAAC AAATGAAAATTACGATAAAAATTTATGTTTAGATGTAGAACTTTTTGAGAATTTCTTACAAGCTACGCAAAGTGTAGCAC TTGAAGAGCTTAAAAAGCGTTGTGGGCAAAACTATAAAAAAGAACTTTTTGATCGTATTTTCTCACAGATCAAAGCTAAA GGCATAGTCAAAGCCTTGCAAGGCTATGTGGAGATCAAAGGCATCAAAATTTACCTAGCCTTTGCTAAGCCAAATACCAA TGCAAACGAAGAAAGCGTGAAAAAATACGAGCAAAACACCCTTTCTATCATACGCCAGCTTTACTATAGCACGCAAAATA AAAACTCCCTTGATATAGTGATCTTTTTAAATGGCTTGCCTCTTATCACCATAGAGCTTAAAAACCATTTCACCGGACAA AATGTCTTTCACGCCATAAAGCAGTATAAAAAAGACAGAAACCCAAAAGAAGCTATATTTAACTATACGATAGTGCATTT TGCGCTAGATCATGATCTTTGTTACATGAGTACGAAATTAGATCAAGATGCGACTACATTTTTACCTTTTAACCTTGGTT TAAACAATGGTAGTGGCAAAATAGGCCTAGCAAATGGAGCAGGTAATCCGCCAAGTGATGGTATAAAAACAGCTTATTTG TGGGAGAAAATCTTTAAAAAAGATACTTTGCTAAATTTATTTTTTAATTTTGTGCAAGTTGTAAAAAAGAAAAATGAAGA AATCATCATATTTCCTAGATACCATCAATTCGATGTAGTAGAAAAGCTACTCGCCCATGCAAAAGAAAACGGCACAGGGC AACGCTACTTGATCCAGCATAGTGCAGGAAGTGGCAAGAGTAATTCTATATCTTGGCTTGCACATAATCTCGTAAGCTTG CATAGACTTGAAAAAAATATCTTTGATTCTATCATCGTAGTAACCGATAGAAAAGTGCTTGATAGTCAAATAAGAGAAAA TGTAAAATCCTTTTCGCAGACAAAAAATTTAGTAGAAGCTATCACTCATGGAAGCAAACAGCTTAAAAATGCTTTAGAAG AAGGTAAGAAAATCATCATCACAACCATACAAAAATTTCCTTTTATTTTAGATGAAATCAAAACTTTAAAAAGCAAAACT TTTGCTATCATTATCGATGAAGCTCATTCAAGTCAAAGCGGAAGTAATGCTCAAAAAATGGCAGAAGCCATAAGGGATAA AAGCGGCGATGAAAGTCAAAATTTAGATGATGAAATTTTAGAAATCATAAAAAATAAAAAACTCCAAAGTAATGCTTCTT ATTTTGCATTTACCGCTACGCCTAAGCCAAAAACCTTAGAAATGTTTGGTATGCCTTGTGATGTTAATGGAGAACAAAGG TTTATCCCTTTTCATCTTTACTCGATGAAACAAGCCATAGAAGAAGGATTTATACTTGATGTACTAAAAGGTTATACAAC CTATAAAAGTTATTATAAAATCATATCTTGTACAAATGATAATCCAAAATACGATAAAAAAAGAGCAAACACAAAACTAA AAGCCTATGTCCAAAACAATATCAAAACAATCGAACAAAAATCACAAATCATGTGTGAGCATTTTTTCCAAAATAGCTTT AAAAAGATAAATGGTAAAGCAAAAGCTATGATTGTAACAAGCTCAAGAGAAAATGCTGTAAAGTATTATCTTGTTTTTAG GGAATATTTAAGAAAAAATTATCCACATTTTAAAGCCATTGTAGCTTTTTCAGGTGAAGTAAATTTAGAAGGTGAAATTT ATAGCGAAAGTGGTTTAAATGGTTTTGCGGAAAATGTTTTAAAAGATGAGTTTAAAAAAGATGAGTATCGTTTTTTAATC GTTGCGGAAAAATACCAAACCGGATTTGATGAGCCATTATTACATACTATGTATGTGGATAAAGCATTAAGTGGGGTAAG TGCAGTACAAACTCTATCAAGACTAAACCGAACTTGCAAAAACAAAGAAAACACTTTTGTGCTAGATTTTGTAAATACTC ATGAAGATATAGCAAAATCTTTTAGTGTGTTTTATGAGCAAACTTATTTAAGTGAAGCCACAGATGATAATAGAATTTTT GATTTAAAGGCAAATCTAAATGAGTATGAAATTTATACCCAAGAAGAAATAGATGATTTTGCAAATGCTATTTTAAGAAA AGAAAAAGAAAATATCATTCATGCAAAATTGGACATAATGCTAGATAGATTTAATCAAAAAAGTGATGATGAAAAATTAG ATTTTTATAATAAAGCAAAAACTTATCTTAAAGAGTATTCTTTTCTTGCACAAATATTGCCTTATGAAGACATAGAGCTT GAAAAACTCTATATATTGCTTAAAAAACTTGCTAGTAAGATCATCTTGCCTAAATCAGAGGATTTAGCTAAAGGAATTTT AGATAATGTGGATTTTGATAGTTATCGCTTACAACTTGATAAAACACAAGACATCGTTTTACAAGGAAATGGAGAGCTAA AGCCTTCGTTCGCAGATGGTTCGAGCAAAAGTGTTGAAGCTGAATTAGAAGAACTTTCAAACATCATCAAAGATTTTAAT AACAAATACGCAAATATAGACTTTAATGAAAGCGATAAAATCGCTAAAATCTTATACGATATAAAAGATGATATAGCAAA AAATGAAAGAATACGTGAAACTTTTAGCAAATCCGATATACAAAATTCTCGTATCGAGTTTGATGCGCTTTTAAAAGATA AAATTCAAGATATCTTGGAGTTAAATTTAGAACTTTTTAAACAATTTAATCAAAATATAGAATTTAAAGACAAGATAGCA AATACCATGTTTAATATGGTTTGTAATGATTTTTAA Protein sequence : MTNYKEKDLENFIESYLLENHAYIKRTNENYDKNLCLDVELFENFLQATQSVALEELKKRCGQNYKKELFDRIFSQIKAK GIVKALQGYVEIKGIKIYLAFAKPNTNANEESVKKYEQNTLSIIRQLYYSTQNKNSLDIVIFLNGLPLITIELKNHFTGQ NVFHAIKQYKKDRNPKEAIFNYTIVHFALDHDLCYMSTKLDQDATTFLPFNLGLNNGSGKIGLANGAGNPPSDGIKTAYL WEKIFKKDTLLNLFFNFVQVVKKKNEEIIIFPRYHQFDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVSL HRLEKNIFDSIIVVTDRKVLDSQIRENVKSFSQTKNLVEAITHGSKQLKNALEEGKKIIITTIQKFPFILDEIKTLKSKT FAIIIDEAHSSQSGSNAQKMAEAIRDKSGDESQNLDDEILEIIKNKKLQSNASYFAFTATPKPKTLEMFGMPCDVNGEQR FIPFHLYSMKQAIEEGFILDVLKGYTTYKSYYKIISCTNDNPKYDKKRANTKLKAYVQNNIKTIEQKSQIMCEHFFQNSF KKINGKAKAMIVTSSRENAVKYYLVFREYLRKNYPHFKAIVAFSGEVNLEGEIYSESGLNGFAENVLKDEFKKDEYRFLI VAEKYQTGFDEPLLHTMYVDKALSGVSAVQTLSRLNRTCKNKENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDDNRIF DLKANLNEYEIYTQEEIDDFANAILRKEKENIIHAKLDIMLDRFNQKSDDEKLDFYNKAKTYLKEYSFLAQILPYEDIEL EKLYILLKKLASKIILPKSEDLAKGILDNVDFDSYRLQLDKTQDIVLQGNGELKPSFADGSSKSVEAELEELSNIIKDFN NKYANIDFNESDKIAKILYDIKDDIAKNERIRETFSKSDIQNSRIEFDALLKDKIQDILELNLELFKQFNQNIEFKDKIA NTMFNMVCNDF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1765 | NP_231400.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 4e-154 | 41 |
| VC0395_A1363 | YP_001217306.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 4e-154 | 41 |
| VPI2_0013c | ACA01830.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 2e-153 | 41 |
| SAS0025 | YP_042158.1 | type I restriction enzyme protein | Not tested | SCC476 | Protein | 5e-145 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CJJ81176_0780 | YP_001000448.1 | type I site-specific deoxyribonuclease chain R | VFG1098 | Protein | 2e-154 | 41 |
