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Name : CJJ81176_1534 (CJJ81176_1534) Accession : YP_001001189.1 Strain : Campylobacter jejuni 81-176 Genome accession: NC_008787 Putative virulence/resistance : Unknown Product : type I restriction-modification enzyme, R subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 1454125 - 1457220 bp Length : 3096 bp Strand : - Note : identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 DNA sequence : ATGAGCAAGGCGAAGACTAGTGAGTTTGATTTAGAGCAGTTTGTTATATCATCACTACTTGAGCATGGGTGGTGCTATGA AAAGCCTGTAAGAGCCACTGATGAAGTTTTGCTAGAAACTAGCCTTGTAAATGCACTTTGTAGGCTAAATCCACAGCTTG ATTTATCAAAAGCTAATGAAATTTATAAGGAGCTAAAAAGCAAAAATCATCTTAGCCTTTTAGATAGCAATGAAAACTTT CATTATAAGCTTGTAAATGGGGTAAATATAAACACTACAAAAGACGGCGAAAGCAGAGCTGATATCATAAATCTAATTGA TTTTAATAATGCAAGCAACAATGAATTTATAGCAACAAACCAGCTAAGCATCACAGAAGCTAAAGAAAACAAAATCCCCG ATGTAGTGCTATATATAAATGGAATTCCGCTTGTTTTAATGGAGCTAAAAAGCCCAAGCGATGAAAACGCCACGATAAAC TCAGCTTATAATCAAATAAACACTTATAAACAAACAATCCCAAGTATTTTTACATATAATGCTTTTTGTGTGATAAGCGA TGGGTATTTTGCTAGGGCGGGGAGTATTTCGGCTGATTTTTCAAGGTTTATGGCGTGGAAAAGTAGCGATGGGATAAACT ACGCTCCAAACAAGTCTTTAGAAATTAAAACCTTAATAGATGGTATGCTAAATCCAAAAACCTTGCTAGATATCATTTGC AATTTCATAGTTTTTGAAAAAGAGCAAATAAGAGATTTAAATGGTATTTTAAGTATAAAAACTACCAAAAAAATCGCTTG CTATCATCAATACTACGCAGTAAATAAAGCCATTAGTAGAACAATCACAGCAAGTAGCAAAGACGGAGATAAAAAAGGTG GCGTGGTGTGGCATACGCAAGGTAGTGGGAAGTCTTTGTCTATGGTGTTTTATAGTGCTAAAGCGATAAAGGCTTTAAAT AATCCTACGATTTTGCTTATCACGGATAGAAATGATCTAGATGATCAGCTTTTTGGTACTTTTGCAAGTTGTGCGAACCT TTTAAGACAAGAGCCAAAACAAGCAAACGATAAAGAGCATTTAAAAGAGCTTTTAAGGGTAGCTAGTGGTGGAGTGGTAT TTACTACTATTCAAAAATTTAGTCCAGAAAATGATAATGTATTTGAGTGCTTATCGCTTAGAGATAATATCATCGTAATT GCAGATGAAGCACACAGAACCCAATACGGCTTTGATGCAAAAGTAGTAGAAGAAAAGTCAAAAAGTGGCGATGTGCTAGG GCAAAAGATAGTTTATGGTTTCGCAAAATATCTGCGTGATGCTTTGCCAAATGCTACTTATATAGGATTTACAGGAACGC CAATTGAAAGCCATGATATAAACACCCCTGCAGTTTTTGGAAACTACATAGATATATATGATATATCAAGAGCTGTTGAA GATGGTGCTACTGTGAGTATATATTATGAAAGCAGACTTGCCAAAATAGAGCTAAGCGAAGAAGGAAAAAGGCTTGTAAA TGAATTAGATGAAAAGCTTGAAAACCAAGATAGCCAAAAAGCAAAAGCTACTAAGCTAGAAGCTTTAGTAGGTAGCACAA GCAGACTAAAACAAATCGCTAAAGATATAGTAAAACACTTTGAAACAAGGTCTAGTAAGCTCGGCGGAAAAGGTATGATA GTAAGTATAAGCCGAAGCGTAGCTATAAAACTATATGATGAAATCATAAAAATAAGACCAAGTTGGCATAGCGATGAGCT AAGTAGCGGGGCTATAAAAGTAGTGATGACTTCAAGCTCTAGCGATGGGGTAGAGTTTAGTAAACATCATACAAGTAAGA TTCAAAAGCAGTTTTTGGCAAATCGTATGAGAAATATAGACGATGAATTAAAACTAGTTATAGTGGTGGATATGTGGCTA ACTGGCTTTGATGTGCCATCGCTTCATACTCTTTATATAGATAAGCCTATGAAAGGGCATAATCTAATGCAAGCTATAGC TAGAGTAAATAGGGTTTATAAGGATAAACCTAGTGGGCTTGTGGTGGATTATCTTGGGATTGCAAGTGATTTGAAAAAAG CTTTATCATTTTATAGTGAAAGTGGTGGCAAGGGCGATATAATCACTACTCAAGAAGACGCTGTAAAAGTGATGATAGAA AAGCTTGAAATCGTAGAACAAATGCTGCCAAATGACTATGAAAAATACTTTGAACTTGATACGGGGGCTAAACTTGAATA TATACTTGATGTAGAAGAGCATATATTATCAAATGAAGATGGTAAGAACAGATTTATAAAAGAATTTGCAGCACTTGATA AAGCCTACACGATAGCTATGCCACACGAAAAAGCTTTGAGCATAAAGAATAAAATCGCTTTTATGTATGCGATAAAGGCT AGGTTTTTAAAGTTTGCTAAAGAAAATGAGAATGAAAATTTGCTTAATCAAGCTTTGATAAAGCAAGTAGTAGATAAAGC TATTGTATCATCTAAAGTGGTGGATATTTTTGATGCTAGTGGTATAAAAAAGCCTGATATATCTATACTTTCTGATGAGT TTTTACTAGAAGTAAAGAATATGAAGCGTAAAAATTTAGCCTTTGAAATGCTAAAAAAGATACTAAATGATGAGATAAAA GCAAGAGAAAAGCTAAGCCTAACAAAGGCTAAAAAATTAGCACAAATGCTTAGTGATGCTATCAAAAAATATAACAATAA GCTAATCTCATCAAGCGAGGCACTAGATGAGCTAATAAATATGAGTAAAAGCATAGTAAGTATGGAAGATGAGGCTAAGA AGTTAGGTTTAAAAGACTATGAATACGCCTTTTACTCAGCACTTGCTTGTAATGATGAGTATGAAAAGATTTTAGGCAAT GAAAAACTATTAGCACTCGTTAGTGAAATACTGCAAATTATCAAAAACAATGTAAGTATAGACTGGATGATAAAAGAAAA TGTAAGAGCAAGATTAAGAGTAGCTGTAAAAAGAGTGTTAAATAAGTATGGTTATCCACCTGATATGCAACAACTTGCAA TTGATGGAGTTTTAGCTCAAGCTGAAATTTTGGCTAAGGAATTAGCTAACGAGTAG Protein sequence : MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENF HYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDIIC NFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALN NPTILLITDRNDLDDQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLSLRDNIIVI ADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVE DGATVSIYYESRLAKIELSEEGKRLVNELDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMI VSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDMWL TGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIE KLEIVEQMLPNDYEKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKA RFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIK AREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGN EKLLALVSEILQIIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELANE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 45 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 45 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 45 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 43 |
