Gene Information

Name : kpsT (CJJ81176_1440)
Accession : YP_001001096.1
Strain : Campylobacter jejuni 81-176
Genome accession: NC_008787
Putative virulence/resistance : Virulence
Product : capsular polysaccharide ABC transporter, ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 1364364 - 1365026 bp
Length : 663 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGATAAAGCTAATTAATCTAACTAAATCTTATCCTTTATTTAGTGGCGGAAGGCATTATGTTTTTAAAAATTTTACTTT
TGAATTTCCTGAAAATTGTAGTATAGGATTGATGGGGGGTAATGGCGCAGGCAAGTCCACTCTCATGAGACTCTTAAGTG
GAGCAGAGCTTCCTGATAATGGTAAGATAATTACTAATAAAAAATTATCTTGGCCTTTGGGTTTAAATGGGGCTTTTCAA
GGTTCTTTAACCGCTAGAGATAATGCTAAATTTGTAGCTAGAGTGTATGGTTATAAAGGCAAGGAACTTCAAGAAAAAGT
AAAATTCGTAGAAGATTTTGCAGAGCTTGGGAAATTTTTTGATGAGCCTATGAAGACTTATTCTTCGGGAATGAGTGCTA
GGATAGCTTTTGGACTTAGCATGGCTTTTGATTTTGATTATTATTTGATCGATGAAGCGGGAGCTGTTGGAGATCCTGCT
TTTAGGGAAAAAAGCGTGAAATTATATAGAGAAAGATTAAGCAAATCAAAAGTGATTATGGTATCTCATAATGTAGCTGA
AATTAAAGAATGGTGTGATAAAATAATTTATATGAAAAATGGACAAATTACGGTTTATGATGATGTAGATGAAGGAATAG
CTGTGTATCAAGGAAAGGCTTAA

Protein sequence : 
MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGGNGAGKSTLMRLLSGAELPDNGKIITNKKLSWPLGLNGAFQ
GSLTARDNAKFVARVYGYKGKELQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQGKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-57 59
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 1e-57 56
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 1e-36 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsT YP_001001096.1 capsular polysaccharide ABC transporter, ATP-binding protein VFG1449 Protein 4e-58 59
kpsT YP_001001096.1 capsular polysaccharide ABC transporter, ATP-binding protein VFG0696 Protein 5e-38 44
kpsT YP_001001096.1 capsular polysaccharide ABC transporter, ATP-binding protein VFG0258 Protein 4e-37 43
kpsT YP_001001096.1 capsular polysaccharide ABC transporter, ATP-binding protein VFG2563 Protein 7e-40 43