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Name : kpsC (CJJ81176_1413) Accession : YP_001001069.1 Strain : Campylobacter jejuni 81-176 Genome accession: NC_008787 Putative virulence/resistance : Virulence Product : capsule polysaccharide export protein KpsC Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 1333931 - 1336000 bp Length : 2070 bp Strand : - Note : identified by match to protein family HMM PF05159 DNA sequence : GTGAAGCATTACTCAATATCAAAAAAACTTATTGCTAATGCTAGAAATTTTTATACTATTTCTTTGTATAAGAAAAATTT AAAAATCAAAAAAGATGATCTTTTCTTTGGTTGGGGACGCAAAAAATCAGGTTTAAAAGCTATGAATTTAGCTAAAAAAT ATAAGGCTAAATTCATACTTTTAGAAGATGGATTTATCCGCTCATTAAACTTAGGGGTTGAAAATAGCCCAAGTTTTTCT ATGGTTAAAGATGATATAGGCATTTATTATGATGCAACAATGCCTTCAAAGCTTGAAAATCTTTTAAATACTTGTGAATT TAAAGATGAAGAAATCAAGCAAGCTAAAAAAGCTATAGAGCTTATCAAAAAATATAAAATTAGCAAGTATAATAACAATC TCGATATTCCAGATGATTATTTTCAAAAAGATGAAAAAAGGGTTTTAATCATCACCCAAACGGCCAATGATGCCTCGCTT GAATTTGGGCTTGCTAAAGGTTTTAAAACCATCGATATGATAAAAGATGCCATAAAAGAAAATCCTAAATCTAAAATTTA TATAAAAATCCATCCTGATGTTTTAAGCGGTAAAAAACAAAGTGATTTAGATATAAATTCCTTACCTAAAGAATGTATTT TAATTACTGAAAATTTTAATCCCATAGCCTTACTTGAGTTTTTTGATAAGGTTTATACCAAAACTTCTGGTATGGGTTTT GAAGCTTTGATGCAAGGATGTGAGTGTGTTTGTTATGGTATGCCTTTTTATGCAGGTTGGGGTCTAACAAAAGATAAATT AGAGTGTAAAAGAAGGATGCAAAAAAGAAGTTTAGAAGAAGTTTTCTATGCTGCTTATATACTTTATAGCGAGTATTTTA ATCCTTATTTAAATCAAAAAAGTAATATTTTTGATACTATTCAAACTTTAGCAAAATATAAAGATATAGAAAAGGCAAAT TCTAACAGGCTTCTTATGCTAGGCTTTACCTTATGGAAAAGGCATTTTATCAAGCCTTTTTTTAAGGCTAAAAACAATGA AATCATTTTTTTAAATTCTTTAAAATCTTTAGCTAGATATAAACTTAAAGAAGATGATAAATTCTTTATTTGGGGTAAAA GGATAGATTATAATACTCTTAAAACTACTCTTATAAAAAAAGCACAAGATGAGAATTTGCTTCATTTTACTCCTAAAATT TCTTTAGTTGAAGATGGATTTATCCGCTCAATCTCTTTAGGTTCTGATCTTACGCGCCCTTTTTCTTTAATCGTTGATGA TAAAGGACTTTACATAGATCCAAATAAAGCAAGTAAATTAGAAGAGCTTTTGCAAAATGAAATTTTTGATGAAAATATAC TAAATAGGGCAAAAAATATTATAAAAATCTTACTTGAGAACCGCTTTTCAAAATATAATGGCTTAAAGCATGAAGACTTA AAGATCAATGCCAAAATAGGACAAAAGATTATTTTAATCCCTGCTCAAGTTGAAGATGATGCTTCGATGATTTTAGGAGG TTTTGGCTTATCTACTCTTGATTTGCTTAAAGAGGTACGTTCTAAAAATCAAGATGCTTATATCATCTTTAAACCCCATC CTGATGTGTTGAGTGGCAACCGTGTGGGTTTAAAAGATGAAACACGCATCTTGGAATTTTGTGATGAGATTGTAAAAGAT TGCAGTATTGATAGTGCTATAAAAATTGCTGATGAAATTCACACTATTACTTCTACAAGTGGTTTTGATGCTCTTTTAAG AGCTAAAAAAGTTTTTACTTATGGTATGCCTTTTTATGCGGGCTGGGGTTTAACAAAAGATAAACATAAATGCAAAAGAA GAACAAGAAAACTAAGCCTAGAGGAGCTTGTAGCAGGTGCTTTGATCACATATCCAAGATATATAAATCCTAAAACAAAA ACTTTATGTGAAATTGAAGTTTGTTTAGATATAATGCTAAATTTACAAAAAGCTTATTTTTCAAAAAAATATATAAAATT GGCAATAGATTTTAAAACTTTTATGCTTAGAAAAATAAGAAGATTTTATGAATTTTTAGCAAAGAAATGA Protein sequence : MKHYSISKKLIANARNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFS MVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASL EFGLAKGFKTIDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITENFNPIALLEFFDKVYTKTSGMGF EALMQGCECVCYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQTLAKYKDIEKAN SNRLLMLGFTLWKRHFIKPFFKAKNNEIIFLNSLKSLARYKLKEDDKFFIWGKRIDYNTLKTTLIKKAQDENLLHFTPKI SLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENILNRAKNIIKILLENRFSKYNGLKHEDL KINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETRILEFCDEIVKD CSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKHKCKRRTRKLSLEELVAGALITYPRYINPKTK TLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 1e-104 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| kpsC | YP_001001069.1 | capsule polysaccharide export protein KpsC | VFG0259 | Protein | 6e-105 | 41 |
