|
Name : Veis_4862 (Veis_4862) Accession : YP_999570.1 Strain : Verminephrobacter eiseniae EF01-2 Genome accession: NC_008786 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 5375750 - 5377552 bp Length : 1803 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tbd:Tbd_ DNA sequence : ATGCACTTCTTGCGCTCCCCCTTGGTGCTCTTTGTCGCCGACCTGGCGCTGGCGCTGCTGGCCTGGTGGCTGGCCTTCTG GCTGCGTTTCAACCTGGACATTCCGGAGGAATTCGTCCAACTGGCCCTGGCGAGCAGCCCATGGTGTGTGCTGGCCTACG GGGTCGGCTTCGCGTTCGCCCGGATCGACCGCCAGGTCTGGAGCTATATCGGCCTGCCCGAGCTACGCCAACTGGCCATC GGCATCGTCCTGAGCGGCACGCTGACTGCGGCGGGGGTGCTGATGCTCAGGCTGCACGCTTTCCCGCGCTCGACCCTGCT GTTGCAGCCGCTGCTGGCCTTGGTGCTGATGGGCGCTGCCCGGGCGGGCTGGCGCACGTTCGCCGAGCGGCGCCTGGTGG CCCGGCAGGGCAAGCCGGTGCTGATCCTGGGCACTTTGCCGCAGGCTTCGGACGCGCTGCGGGCGCTCAAGGGGTCCTCG CAATGGCAGCCGGTGGGCATTTTGTCGCCGCAACCCGACGAGGTGGGCCGCTCGCTGCAGAGCGTGCGGGTCTGGGGCAC GCCGGCCGAGACCGCGCGCGTGGCGCAGACGCTGGCCGTGCGGGCCTTGCTGGTGGCCAGCCCGCCGGGCGCATCGGGCC GGCGCGAGATGCTGCTGCAAGCCGCAGATACCGGCGTGGCGCTGCTGACCTTGCCACGGCCGGACGAATGGCTCAAGAGC GACGGCGCGGGGCCGCGCAGGCTGGAATTGGAGGATCTGCTCGGCCGCGAGTCGGTGCAGTTGGATGTGGCCAGCCTGTC GGGCCTGCTGTCGGGGCAAACCGTGCTGGTGACAGGCGCGGGGGGCTCGATCGGCGCGCAGTTGTGCCGCCAGATCGCGC GTTTCGGTGTCCGGCGGCTGGTGTGCGTCGACATTTGCGAATTTGCCGTCTACCAGTTGGAGCAGGAACTGCGCGAAGCC CACCCGCAGATGCAAGGCTGCTACTACACCGCGAATGTGCGCGAGCCGGCGCGCCTGCTGGCCATCGCGGACAAGCACCG CCCGGCCGTGGTCTTTCACGCCGCTGCGTACAAGCATGTGCCGTTGATGGAGGAGCTCAACGCGATCGAGGCCCTGCGCA CCAACGTGGCCGGCTCCTGGCATGCGGCGCGCGCGGCCGGTGTTTGCGGGGCCGGGCGTTTCGTGATGATCTCCACCGAC AAGGCCGTCAACCCGACCAACGTGATGGGCGCCAGCAAGCGGCTGGCCGAGTTGATGGTGCAAAGTGCCGCGCAGGCGTT CGCCGGCACCCATTACGTCTCGGTGCGCTTTGGCAATGTGCTGGGTTCGAGCGGCTCGGTGGTGCCGCTGTTCACCAGGC AGATTGCCACCGGTGGCCCGGTCACCGTGACGCATCCGGACATCGTGCGCTACTTCATGACCATTGCGGAAGCGGCGCAG TTGGTGCTGCAAGCCGGGTTGATGGGCCGCTCGGGCCAGATCTTCGTGATGGACATGGGCGAGCCGGTGAAGATCATCGA ACTGGCCCGCATGATGATTCGTCTGTCCGGCAAGACCGAACTGGAGATTCCGATCAGCTACACCGGCCTGAGGCCCGGTG AAAAATTGTTCGAGGAATTGCTGGCCAACGACGAATCCAGCGTGGCCACGCCGCATCCCAAACTGAGAATCGCCAAGACC TCCCGGCAGGGGCTGCCGGATGTGGCGTCGGTGTTGCAATGGATCGGGGATGCCGATGCTGAACCAGAGGAGGCGATACG GGCCTGGCTCCGGACGCTGGTGCCGGAGTATCTGGTGCGCTGA Protein sequence : MHFLRSPLVLFVADLALALLAWWLAFWLRFNLDIPEEFVQLALASSPWCVLAYGVGFAFARIDRQVWSYIGLPELRQLAI GIVLSGTLTAAGVLMLRLHAFPRSTLLLQPLLALVLMGAARAGWRTFAERRLVARQGKPVLILGTLPQASDALRALKGSS QWQPVGILSPQPDEVGRSLQSVRVWGTPAETARVAQTLAVRALLVASPPGASGRREMLLQAADTGVALLTLPRPDEWLKS DGAGPRRLELEDLLGRESVQLDVASLSGLLSGQTVLVTGAGGSIGAQLCRQIARFGVRRLVCVDICEFAVYQLEQELREA HPQMQGCYYTANVREPARLLAIADKHRPAVVFHAAAYKHVPLMEELNAIEALRTNVAGSWHAARAAGVCGAGRFVMISTD KAVNPTNVMGASKRLAELMVQSAAQAFAGTHYVSVRFGNVLGSSGSVVPLFTRQIATGGPVTVTHPDIVRYFMTIAEAAQ LVLQAGLMGRSGQIFVMDMGEPVKIIELARMMIRLSGKTELEIPISYTGLRPGEKLFEELLANDESSVATPHPKLRIAKT SRQGLPDVASVLQWIGDADAEPEEAIRAWLRTLVPEYLVR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-70 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-71 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Veis_4862 | YP_999570.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-67 | 42 |
| Veis_4862 | YP_999570.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 7e-73 | 42 |
