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Name : Veis_3013 (Veis_3013) Accession : YP_997764.1 Strain : Verminephrobacter eiseniae EF01-2 Genome accession: NC_008786 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 3360938 - 3364150 bp Length : 3213 bp Strand : + Note : KEGG: bte:BTH_I2740 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like DNA sequence : ATGGCTTTTTTATCTGAAGCCGCTATTGAGCTGGCACTGCTAGAGCAATTGCGGGGGCTGGGCTACCGCATCGAGCAGGA AAAAGATATCGGCCCCGATGGTCCGCGTCCGGAACGCGAAAGCCACGATGAGGTCGTGCTCAAAAAGCGCTTCGCGGATG CTGTGGCGCGGCTCAATCCTGGCCTGCCGCTGGAGGCGCGGCAGGTTGCCATGCGCCGGCTGATGCAGTCGGAGTTGCCA ACGCTGCTCGAAGAAAACCGCCGCCTGCACAAACTGATGACCGATGGGGTGGAGGTCGAGTACTACGCCGAGGATGGCAC GCTGACCACGGGCACGGTCGCGCTCATTGACTTCAAGCGGCCAGAGCAGAACGATTGGCTGGCGGTCAGTCAATTCGTCG TGATTGCCGGGCAATATCAGCGCCGCCCGGATGTGGTGGTGTTTGTGAATGGCCTGCCGCTGGTGGTGATCGAGTTGAAG GCGCTAGGCAATGCGACTTTGCTCGCGGCCTTCCAGCAGTTGCAGAACTATAAGCAGCAGATTGCGGCATTGTTCAATAC CAATGCGCTGCTGGTGACTTCGGATGGTGTCCATGCCCGTGTTGGTTCGCTGTCTGCCGATCAGGAGCGCTTTATGCCTT GGCGCACCACGGATGGCACGGCGATTACGCCAAAGGGCAAACCGGAGTTGCCAACCTTGATCGAGGGCGTGTTTGCGCAT CGCCGCCTGCTCGACCTGTTGCGCCACTTTACGGTGTTTGATGAAACGGGTTCAGGCTTGGTCAAGATTATTGCTGGCTA TCATCAGTTCCACGCCGTCATGCGTGCGGTCGATTCAACCTTGCGCGCATCGAGCCAATGGCAGGGGGTGCAAGAAGACC CACGCGATTACGGCTGGTCCAGTGTCAAAACCCAGGCCAAAGGTGACAGAAGGGCCGGCGTGATCTGGCATACCCAAGGC TCAGGCAAAAGCCTGTTGATGGTGTTCTACGCCAGGCAACTGGCACAGCATGTGGCCATGGCGAATCCAACCCTGGTCGT GCTGACCGACCGCAACGACCTTGACGATCAACTTTTTGCCACTTTCTCCAGGTGCCGCGATTTCATTCGGCAAACACCGG TGCAGGCCAACAGCCGGGAGGATTTGCAAAAACTGTTGATGCGCGCATCCGGCGGTGTGATTTTTACCACCTTGCAAAAG TTTGCCGAGTCAAGTCAGCCGCTGACCGAGCGTCACAATGTGGTGGTGATTGCTGATGAGGCGCACCGCAGCCAATATGG TTTTCGCGCCAAACTCGATGCCAGGACGGGCGGGGTTTCCTACGGCTTCGCCAAATACCTGCGCGATGCCCTGCCTCATG CCTCATTCATCGGCTTTACCGGCACGCCGATCGAAGCCAGTGGTGTGAACACCCGGGCGGTGTTTGGCAATTACATCGAT ATCTATGACATCAGCCGTGCCGTCGAGGATGGCGCGACGGTGCTCATCTATTATGAATCACGGCTTGCGCGCATCGAACT CGATGGGGATGAGAGGCACAAAATCGATGCCGAAGTGGATGCGATGATCGAGGACGACTCCGAAGCCGAACAAGAGCGCT TCAAGAAAGAATGGTCAACCGTGGAAGCCCTGGTGGGCAGCGATAAACGCCTCGCGCTGATTGCGCAAGACATGGTGACG CACTTCGAAGCGCGCATGGCCGCACTGGATGGCAAGGCAATGGCGGTGTGCATGAGTCGCCATGTCTGCGTGAGACTGTA CGAGGAAATCGTGAAACTGCGCCCCGGCTGGCACAGCGCCGACGACAAGGCGGGCGCGCTCAAAATCGTGATGACGGGTG CCGCCAGCGACCCCGCAGAATGGCAACAGCATGTCGGTAACAAGGCGCGCCGCGATGTGCTGGCCAAGCGCGCTCGCGAC ATCAGGGACCCGCTCAAACTGGTGATTGTGTGCGATATGTGGCTCACCGGTTTTGATGCGCCCTGCATGCACACGATGTA TGTGGACAAGCCCATGCAAGGGCATGGCCTGATGCAGGCGATTGCGCGGGTCAATCGCGTGTTCCGCGACAAACCCGCCG GATTGATCGTGGACTATATCGGCATCGCCCATTATCTTAAATCGGCGCTGCGACAATACTCGAAAAGCGACCGGAAAAAT ACCGGTATCGATGAATCCAAGGCCGTCGCGATGATGATGGAGAAGTACGAAATCGTGCGCAACATGTACCACGGTTTCGA TTACACGTTGGATGGAACAGCGCAAGAACGCCTGGTCATGATGGCCGGCGCCATCGAGTGGATTCTCGACATGCAGCAAA AATCGGCGGCCAGGGAGAGCAGCCGGGAAGGCAAGAAGACTGCGCATCGCCGCTATCAGGATGCAGTGCTGGCGCTGTCC AAGGCTTTTTCCCTGGTGTCTGCTTCTGACGAAGCGCGCACCATTCGGGAAGAAGTCGGCTTTTTCCAGGCGATTCGCGA TGCACTGGTGAAAAGCAGTGGCGCAATGGGCGTGATGGGGCAAGAACGCGAATTGGCCATTCGGCAAATCGTGAGCCGCG CGGTGATTTCTACCGAAATCGTCGACATTCTGGCCGCAGTCGGCATCAAGAGCCCGGATATTTCCATCCTGTCCGACCAA TTTCTGACCGAAATCGCGCAGATGGAGCGCAAGAATCTCGCGCTGGAGGCCTTGCGCAAGTTGATCAATGACGACATCCG TTCACGCAGCAAAGCCAACGTGGTGCAAAGCAAAGCCTTCTCGGAACGGCTGGAAGAGGCCATGGCGCGCTACCACGCCA ATGCCATCACGACCGCCGAAGTGCTGCAAGAGTTGATCACCCTGGCCAAGGACATTCGCGCCGAGCGCCAGCGCGGGGAA GAGTCCGGTTTGTCGGATGAGGAGATTGCTTTCTATGACGCGTTAGCCGAAAACGATAGCGCGCTGCAGATGATGGGCGA TGACAAACTGCGGCTGATTGCCCACGAATTGCTGGTCAGCCTGCGCAACAACATATCGGTGGATTGGGCGCACCGCGAAT CCGCCCGCGCGCAAATGCGCATGCTGGTCAAGCGCATTCTGCGCAAATATGGCTATCCGCCGGATTTGCAGGACGAGGCC GTGCGAACGGTATTGCGACAGGCTGAGGTGTCGATCAGGAGCATGTCCGGCAATGCGCTCGATGAAAATCTGAAGGGCTT CCGCCTGAAATAA Protein sequence : MAFLSEAAIELALLEQLRGLGYRIEQEKDIGPDGPRPERESHDEVVLKKRFADAVARLNPGLPLEARQVAMRRLMQSELP TLLEENRRLHKLMTDGVEVEYYAEDGTLTTGTVALIDFKRPEQNDWLAVSQFVVIAGQYQRRPDVVVFVNGLPLVVIELK ALGNATLLAAFQQLQNYKQQIAALFNTNALLVTSDGVHARVGSLSADQERFMPWRTTDGTAITPKGKPELPTLIEGVFAH RRLLDLLRHFTVFDETGSGLVKIIAGYHQFHAVMRAVDSTLRASSQWQGVQEDPRDYGWSSVKTQAKGDRRAGVIWHTQG SGKSLLMVFYARQLAQHVAMANPTLVVLTDRNDLDDQLFATFSRCRDFIRQTPVQANSREDLQKLLMRASGGVIFTTLQK FAESSQPLTERHNVVVIADEAHRSQYGFRAKLDARTGGVSYGFAKYLRDALPHASFIGFTGTPIEASGVNTRAVFGNYID IYDISRAVEDGATVLIYYESRLARIELDGDERHKIDAEVDAMIEDDSEAEQERFKKEWSTVEALVGSDKRLALIAQDMVT HFEARMAALDGKAMAVCMSRHVCVRLYEEIVKLRPGWHSADDKAGALKIVMTGAASDPAEWQQHVGNKARRDVLAKRARD IRDPLKLVIVCDMWLTGFDAPCMHTMYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAHYLKSALRQYSKSDRKN TGIDESKAVAMMMEKYEIVRNMYHGFDYTLDGTAQERLVMMAGAIEWILDMQQKSAARESSREGKKTAHRRYQDAVLALS KAFSLVSASDEARTIREEVGFFQAIRDALVKSSGAMGVMGQERELAIRQIVSRAVISTEIVDILAAVGIKSPDISILSDQ FLTEIAQMERKNLALEALRKLINDDIRSRSKANVVQSKAFSERLEEAMARYHANAITTAEVLQELITLAKDIRAERQRGE ESGLSDEEIAFYDALAENDSALQMMGDDKLRLIAHELLVSLRNNISVDWAHRESARAQMRMLVKRILRKYGYPPDLQDEA VRTVLRQAEVSIRSMSGNALDENLKGFRLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 47 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 46 |
