Gene Information

Name : BMASAVP1_A0603 (BMASAVP1_A0603)
Accession : YP_991950.1
Strain :
Genome accession: NC_008785
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 611554 - 612405 bp
Length : 852 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
GTGGTGATTCATCGACGAATGCGGGAGAACGGAAGGCGACGTGAGCAACGGGCGCGCGCGTGGCGCAAGCCGCACATTGT
AGAGAAAACGGCGCGCGAGCAGCGCCGAAATCGCCCGAAGGTCCGTTCCCGCGCGCGGCGGCGCTACAATGTCCGCCATC
TCGAACGCATGCGACGGACGTTTTTCAGGATGCGGATATTGCTGGTTGAAGACGATCGGATGATCGCCGAAGGCGTGCGC
AAGGCGCTGAAGGCCGACGGCTGCGCGGTCGACTGGGTGCAGGACGGCGACGCGGCGCTCACCGCGCTCGGCGGCGAGGC
GTACGATCTGCTGCTGCTCGATCTCGGGCTGCCCAAGCGCGACGGCATCGACGTGCTGCGCACGCTGCGCGCGCGCGGGC
TCGCGCTGCCGGTGCTGATCCTCACCGCGCGCGATGCGGTCGCCGATCGCGTGAAGGGCCTCGACGCGGGCGCCGACGAC
TATCTCGTCAAGCCGTTCGATCTCGACGAGCTCGCCGCGCGGATGCGCGCGCTGATCCGCCGCCAGTCGGGGCGCAGCGA
ATCGATGATCCGGCACGGCGCGCTGACGCTCGATCCGGCGTCGCATCAGGTGACGCTCGACGGGGCGCCCGTCGCGCTGT
CGGCGCGCGAGTTCGCGCTGCTCGAAGCGCTGCTCGCGCGTCCGGGCGCGGTGCTGTCGAAGAGCCAGCTCGAGGAGAAG
ATGTACGGCTGGGGCGAGGAGATCGGCAGCAACACCGTCGAGGTCTATATCCACGCGCTGCGCAAGAAGCTCGGCTCGGA
CCTGATCCGCAACGTCCGCGGCCTCGGCTACATGGTCGTGAAGGAAGCGTAG

Protein sequence : 
MVIHRRMRENGRRREQRARAWRKPHIVEKTAREQRRNRPKVRSRARRRYNVRHLERMRRTFFRMRILLVEDDRMIAEGVR
KALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADD
YLVKPFDLDELAARMRALIRRQSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK
MYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-35 51
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-22 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-21 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator BAC0487 Protein 1e-30 48
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator BAC0083 Protein 6e-23 45
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator BAC0197 Protein 2e-26 45
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator BAC0638 Protein 2e-22 44
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator NC_002516.2.879194.p Protein 1e-24 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator VFG0473 Protein 2e-32 48
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator VFG1390 Protein 7e-32 47
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator VFG0596 Protein 3e-22 42
BMASAVP1_A0603 YP_991950.1 DNA-binding response regulator VFG1389 Protein 2e-21 41