Gene Information

Name : afeB (BARBAKC583_1310)
Accession : YP_989558.1
Strain : Bartonella bacilliformis KC583
Genome accession: NC_008783
Putative virulence/resistance : Virulence
Product : iron chelate ABC transporter, ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1362487 - 1363329 bp
Length : 843 bp
Strand : -
Note : similarity to yfeB of Yersinia pestis; identified by similarity to GB:AAU94303.1; match to protein family HMM PF00005

DNA sequence :
ATGATTAAGTCTGAGATTGAGCCTGGGATATTTGCTCAAGGGATCAATGTGACTTATCGCAATGGGCATACAGCTTTGCG
TGAAGTGAGTTTTGAAAGCCCAAGGGGTTCTATTTCCGCACTTGTTGGGGTTAATGGCTCAGGGAAGTCAACATTATTTA
AAACGATAATGGGATTTGTGTGTCCTTCAAAGGGGAAAATTCGCGTTTTGGGTTTGCCGGTTGAAAAGGCTTTGAAGAAA
AATCTTATTGCTTATGTTCCCCAGAGTGAGGATGTTGATTGGAATTTTCCTGTACTCGTTGAAGACGTTGTTTTGATGGG
GCGATATGGTCACATGAATTTCTTTCGTTATGTGAGAAAGCAAGATCATGAAGCTGTTCGTGTTGCGTTGGAACGTGTTG
ATATGTTGGCTTTTGCCAAACGTCAAATTGGTGAGCTTTCTGGCGGGCAGAAAAAACGTGTTTTTTTGGCACGTGCTCTT
GCACAGCAGGCAAAAGCTATCTTACTAGACGAGCCATTTACAGGGGTTGATATTAAAACAGAAGATAAAATCATCGCTTT
GTTAGAAGATTTGCGTAAAGAAGGTGCTGTCATATTGGTTTCTACGCACAATCTAGGTTCTATTCCTGAATTTTGTGATC
ACACAATTTTAATAAAGGGAACTGTTTTGGCTTGTGGGCCAACAGAGAAGGTTTTTACTCAGGAAAATCTTGAAAAAACT
TTTGATGGTACTTTGCGACATCATATTTTTAATTTCCAGGATGCAAAAAAAAGTCATAGTGCTACAGAGAACAGAGACCC
TACGTTTCTTGATGGCAATCAAAAGCTGGAGCCTATGTCATGA

Protein sequence :
MIKSEIEPGIFAQGINVTYRNGHTALREVSFESPRGSISALVGVNGSGKSTLFKTIMGFVCPSKGKIRVLGLPVEKALKK
NLIAYVPQSEDVDWNFPVLVEDVVLMGRYGHMNFFRYVRKQDHEAVRVALERVDMLAFAKRQIGELSGGQKKRVFLARAL
AQQAKAILLDEPFTGVDIKTEDKIIALLEDLRKEGAVILVSTHNLGSIPEFCDHTILIKGTVLACGPTEKVFTQENLEKT
FDGTLRHHIFNFQDAKKSHSATENRDPTFLDGNQKLEPMS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-80 68
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-81 68
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 9e-81 68
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 8e-80 67
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 8e-80 67
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 5e-37 41
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 7e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
afeB YP_989558.1 iron chelate ABC transporter, ATP-binding protein BAC0350 Protein 6e-81 68
afeB YP_989558.1 iron chelate ABC transporter, ATP-binding protein BAC0440 Protein 2e-75 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
afeB YP_989558.1 iron chelate ABC transporter, ATP-binding protein VFG0526 Protein 5e-81 68