Gene Information

Name : Ajs_0931 (Ajs_0931)
Accession : YP_985247.1
Strain : Acidovorax sp. JS42
Genome accession: NC_008782
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 978404 - 979816 bp
Length : 1413 bp
Strand : +
Note : KEGG: tbd:Tbd_2068 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase

DNA sequence :
ATGAACGCCTACGACGACATGAGCGGCCTGCGCCTGCCGCCGCACAGCATCGAGTCCGAGCAATCCGTCCTGGGCGGCCT
GCTGCTGGACAATGGCGCCTGGGAGCGCCTGGACGGGCAGCTCACCGAGGGCGATTTCTACCGCGCCGACCACCGCCGCA
TCTTTTCCTGCATCGCGGCCATGCTCGACCGAGGGCAGCCCGCCGACGTGGTGACGGTGTACGAGGCCCTGCGCGCAGCC
GGCGAAGCCGAGCAGGTGGGCGGCCTGGCCTACCTCAATGCGATGGCGCAGAACACGCCTTCGGCGGCCAACATCCGCCG
CTACGCGGAAATCGTGCGCGGCTGCCGTGTGCGCCGTGACGTGATGGCGCTGGGCCAGGACATTGCCGCGCTGGCTGCCG
AACCCTCGCGCGCCAATGACACCGCGGGCTTGGTGGAGCAGGTCACGGGCATGGTCATGGCCTTGGCCGACACCCGCCAT
GCTGGCCGAGAACCCCAGACCATCGGCGAGCTGCTGCCCGGCGTGCTGGACGCCATAGACCAGCGCATGAACGACGGCGG
CGCCGTGTCCGGCCTGGCCACCGGCTTCCGCTTGCTGGACGAACTCACCTGCGGCCTGCAAGCCGGCGACCTCATCATCG
TGGCGGGCAGGCCAGGCATGGGCAAGACCACGCTGGCAGTGAACATCGCCGAGAACGTGGCCTTGGCCGGGGGCGCGGCC
TTCGTTGTGTCGCTGGAAATGTCCGCAGCCCAGCTTGCCGAGCGCAGCGTCGCGCGCTTCGGCGCCATCGACACGCAGGC
CCTGCGCTCCGGGCGCATCAGCCAGGACGGCTTTACGCGCTTGTCGGCCGCCCTGGATCGCCTGCGCAATCAGCGTCTAG
TCATTGCCGATGATCCGGCACTTGCCAGCGTGGCACGTATCCGGCTTGCCGCGCGCAAACAGAGCCAGCGCCTGGGGGCG
CTCGACCTCATCGTGATCGACTACCTGCAACTGATGCGTGGCGACGGCGCCAACCGCAACGACGAACTGGGCGGCATCAC
GCGCGCGCTGAAGCTGCTGGCGCGGGAGCTGGCTTGCCCGATCATCCTGCTGTCTCAGCTCTCCCGCGCCGTGGAGGCCC
GCCCGGACAAGCGGCCCATCTTGTCCGACCTGCGCGAATCCGGTGCCATTGAACAGGATGCCGACGTGGTGATGATGGCC
TACCGCGATGGCTACTACCGCCCGGACGGCCCGTTGCAGGGGTTCGCCGAAATCCTGGTGCGCAAGCAGCGCATGGGGCC
GACGGGCGACGTGCCGCTGATCTTCCAGGGCTGGCACTCCCGCTTTCTCGATGCCGACGTGCGCGACTTCGCTGCCGCCA
AGGCCAAGGGCGAAGCACCTGCACGCGAAACCCGGAGGGGATTTGGTGACTGA

Protein sequence :
MNAYDDMSGLRLPPHSIESEQSVLGGLLLDNGAWERLDGQLTEGDFYRADHRRIFSCIAAMLDRGQPADVVTVYEALRAA
GEAEQVGGLAYLNAMAQNTPSAANIRRYAEIVRGCRVRRDVMALGQDIAALAAEPSRANDTAGLVEQVTGMVMALADTRH
AGREPQTIGELLPGVLDAIDQRMNDGGAVSGLATGFRLLDELTCGLQAGDLIIVAGRPGMGKTTLAVNIAENVALAGGAA
FVVSLEMSAAQLAERSVARFGAIDTQALRSGRISQDGFTRLSAALDRLRNQRLVIADDPALASVARIRLAARKQSQRLGA
LDLIVIDYLQLMRGDGANRNDELGGITRALKLLARELACPIILLSQLSRAVEARPDKRPILSDLRESGAIEQDADVVMMA
YRDGYYRPDGPLQGFAEILVRKQRMGPTGDVPLIFQGWHSRFLDADVRDFAAAKAKGEAPARETRRGFGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 7e-79 44
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-66 41
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 4e-70 41
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 2e-69 41
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-70 41
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-67 41
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-67 41