Gene Information

Name : Ajs_3999 (Ajs_3999)
Accession : YP_988179.1
Strain : Acidovorax sp. JS42
Genome accession: NC_008782
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4253850 - 4254524 bp
Length : 675 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGCATCCTCATCGCCGAAGACGACCAGGTGCTTGCCGACGGGCTGCTGCGCACGCTGCGCGGCTCGGGCGCCGTGGT
GGACCATGTGGCCAGCGGCACCGAGGTCGATACCGCGCTCCTGACCAACAACGAGTTCGACCTGCTGATCCTCGACCTGG
GCCTGCCCAAGATGCACGGCCTGGAGGTGCTCAAGCGCCTGCGCGGGCGCGGCTCGGCGCTGCCGGTGCTGATCCTCACG
GCGGCCGACAGCGTGGACGAGCGCGTGAAGGGCCTGGACCTGGGCGCCGACGACTACATGGCCAAGCCGTTCGCGCTGTC
GGAGCTGGAGGCGCGCGTGCGTGCGCTCACGCGCCGCGGCATGGGCGGCACCAGCAGCGCCATCCGCCACGGGCCCCTGG
TGTACGACCAGGCGGGCCGCGTGGCCACCATCGACGGCAAGATGGTGGAGCTGTCCGCGCGCGAGCTGGGCCTGCTGGAG
GTGCTGCTGCAGCGCGCCGGCCGCCTGGTGAGCAAGGAGCAACTGGTGGAGCGCCTGTGCGAGTGGGGCGAGGAGGTGAG
CAACAACGCCATCGAGGTCTACATCCACCGCCTGCGCAAGAAGATCGAGCGCGGGCCGATCCGCATCGCCACCGTGCGCG
GCCTGGGCTACTGCCTGGAAAAGATCCCCGGCTGA

Protein sequence : 
MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGTEVDTALLTNNEFDLLILDLGLPKMHGLEVLKRLRGRGSALPVLILT
AADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGGTSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLE
VLLQRAGRLVSKEQLVERLCEWGEEVSNNAIEVYIHRLRKKIERGPIRIATVRGLGYCLEKIPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-38 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ajs_3999 YP_988179.1 two component transcriptional regulator BAC0083 Protein 7e-36 47
Ajs_3999 YP_988179.1 two component transcriptional regulator BAC0487 Protein 4e-37 47
Ajs_3999 YP_988179.1 two component transcriptional regulator BAC0197 Protein 9e-32 43
Ajs_3999 YP_988179.1 two component transcriptional regulator NC_002516.2.879194.p Protein 8e-33 43
Ajs_3999 YP_988179.1 two component transcriptional regulator BAC0638 Protein 1e-27 42
Ajs_3999 YP_988179.1 two component transcriptional regulator BAC0347 Protein 4e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ajs_3999 YP_988179.1 two component transcriptional regulator VFG0473 Protein 2e-38 43
Ajs_3999 YP_988179.1 two component transcriptional regulator VFG1390 Protein 6e-33 42
Ajs_3999 YP_988179.1 two component transcriptional regulator VFG1389 Protein 9e-27 41