Gene Information

Name : Ajs_3395 (Ajs_3395)
Accession : YP_987591.1
Strain : Acidovorax sp. JS42
Genome accession: NC_008782
Putative virulence/resistance : Unknown
Product : transposase, IS4 family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3039
EC number : -
Position : 3583117 - 3584103 bp
Length : 987 bp
Strand : +
Note : PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein

DNA sequence :
ATGAAGCAAAGCAGCCTGGGCCTGAGCAACACCACCAAACGCACCCGCAAGCGCGAATTTCTCGATGCCATGGAGCTGGT
GGTGCCTTGGGCTGAGCTGGTCTCGCTGATAGAGCCCTACGCACCCGAGAGTGGGCGCCGGGGCCAGCAGCCATTTGCAG
TGAGCACGCTGCTGCGCATCCACTTCATGCAGCAGTGGTTCAAACTCAGTGACCCCGCCATGGAAGAAGCCTTGCACGAC
GTGCCAGCCTTTCGGGACTTTGCAGGCCTGTCCCACTGGGACGCACAGATCCCCAGTGAATCGAGCATCCTGCGCTTTCG
TCACATGCTGGAGCGCCACAAGCTGGCCGATCAGATCCTGGCCACCGTGAATGCGCTACTGCAAGCCAAGGGGTTGCAAC
TCAAGGCAGGCACCGTAGTGGATGCCACGCTGATTGCTGCGCCCAGTTCAACCAAAAACCAAAGTCACGAGCGTGACCCC
GAGATGCATCAAAGCAAGAAGGGCAATCAGTGGTACTTCGGTATGAAGGCCCACATTGGGGTGGATGCAGACTCAGGCCT
GGTGCATACGGTGCGAGGCACCAGCGGCAATGTCGGTGATGTGGTCGAGGCCAACAGCCTATTGCACGGGCAGGAGACAG
ACGCCTTTGGTGATGCAGGCTACCAAGGTGTAGACAAGCGGCCCGATGCCAACAAGAACGTACGTTGGCATGTGGCCATG
CGCCCAGGGCTGCGCCGGGCTTTGGACAAAGACAGGCCTGTGGAGGCTCTGATTGACCAGTTGGAGCGCACCAAGGCCAG
CATCCGGGCTAAGGTCGAGCATCCTTTCAGAGTGCTCAAGCAGCAGTTTGGGTATGTGAAGGTGCGCTACCGAGGGCTCA
AGAAGAACACGGCGCAGATCATCACGCTGTTTGCGCTCTCAAACCTGTGGATGGCGAGGCACAAGTTGCTGACTTGCATG
GGGCAGGTGCGCGTGCAGGGAGCGTAG

Protein sequence :
MKQSSLGLSNTTKRTRKREFLDAMELVVPWAELVSLIEPYAPESGRRGQQPFAVSTLLRIHFMQQWFKLSDPAMEEALHD
VPAFRDFAGLSHWDAQIPSESSILRFRHMLERHKLADQILATVNALLQAKGLQLKAGTVVDATLIAAPSSTKNQSHERDP
EMHQSKKGNQWYFGMKAHIGVDADSGLVHTVRGTSGNVGDVVEANSLLHGQETDAFGDAGYQGVDKRPDANKNVRWHVAM
RPGLRRALDKDRPVEALIDQLERTKASIRAKVEHPFRVLKQQFGYVKVRYRGLKKNTAQIITLFALSNLWMARHKLLTCM
GQVRVQGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA AAF71487.1 TnpA Not tested Hrp PAI Protein 7e-67 56
PSPTO_1407 YP_003355052.1 ISPssy transposase or derivative Not tested Hrp PAI Protein 1e-66 56
tnp-33 AAN62255.1 transposase Not tested PAGI-3(SG) Protein 3e-80 55
unnamed AAO33449.1 putative transposase Not tested Not named Protein 7e-53 51
tnpA ACF06175.1 putative transposase Not tested Tn5036-like Protein 6e-63 48
tnpA ACF06178.1 putative transposase Not tested Tn5036-like Protein 6e-63 48