Gene Information

Name : Ajs_2916 (Ajs_2916)
Accession : YP_987132.1
Strain : Acidovorax sp. JS42
Genome accession: NC_008782
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 3089151 - 3090665 bp
Length : 1515 bp
Strand : -
Note : PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66

DNA sequence :
ATGAACGAACCGGTGGATCTGCAGAGCATGGACGAGGCGCAAATGCGCCAGATGCTGCAGCACCTCATGAGCGAGCTCAA
ACACAAGCAGACGCTGCTGGACAAGCTCAGCTACGAGATGGCCATCCTCAAGCGGCTGAAGTTCGCCGCCAAGACCGAGG
CATTGAACGCCGATCAGCGCAGTCTGCTGGAAGACGCGCTCGAAGAAGACCTGCAGGCGGTGGATGAGGAGATCGAGCAG
CTGCGCTCGGCTGAAGAGCGCAGCCCACGCCAGCAACCCAAGCGCCTGCCATTGCCGGCACAACTGCTGCGCCAGGAATT
CACACACGAGCCCGAGGTGACTGAGTGCTGCGGCCAGGCCATGCGCCGCATGGGCGAGGACGTGGCCGAGAAGCTCGACT
ACACGCCCGGCGTGTTCATGGTGCACCGCCATGTGCGCGGCAAATGGGTGTGCGCGTGCTGCCAGACGCTCAAGCAGCAG
CCGGTCGAGGCGCACATCATCGACAAGGGCCTGGCCACCACCGGCTTGCTGGCCCAGGTGCTGGTGGCCAAGTACGCGGA
CCACCTGCCCCTGTACCGCCAGGAGAGCATCTATGCCCGTGCTGGGGTGCCGCTGGCACGCTCGACCCTGGCGCAGTGGG
TGGGCAGCTGCGGCGTGCAACTGCAGCCGCTGGTCGATGCGCTGCGTCAGGAGGTGCTCGCACACAGCATCGTGCACGCC
GATGAGACCCCGGTGCAGATGCTCAAGCGCGGCAGCGAGCGCGATGGCAAGACGCACCGCGCCTACCTGTGGGCCTACAC
CCCGGGGCGGCACGAAGACCTCAAGGCCGTGGTCTACGACTTCTGCGAAAGCCGCGCGGGCAAGCACGCCGGTGAATTTC
TCAACGGCTGGCGCGGCACGCTGCTGGTCGATGACTTTGCGGGCTACAAGCAGCTCATGGGCGAGCACATCACCGAAGCG
GCTTGCTGGGCGCACGCCCGGCGCAAGTTCTTTGAGCTGCACGCAGCCAACAAGAGCCAGATCGCCGAGCAGGCGCTGGT
GCAGATCGGGCAGCTCTACGAGGTGGAGAGGCAGGCGAGCAATGTCGATGGCACCGAGCGGCTGCGAATGCGCCAGCAGC
ACAGCCGCCCGATCGTGGACAAATTGCACGCCTGGCTGAGCGAGCACCGCAGTAAGGTACCCGAGGGTTCAGCCACGGCA
CGGGCCATCGACTACAGCCTGCGGCGCTGGCAGCCGCTCACGCGCTTGCTGGACAACGGCCAACTGCCGATCGACAACAA
CTGGATCGAGAACCAGATGCGACCGGTCGCGCTCGGTCGTAAGAACTGGTTATTTGCCGGGTCGCTGCGGGCGGGACAGC
GTGCGGCTGCCGTGATGAGCCTGATCCAGTCGGCCAAGCTCAATGGCCACGACCCACACGCTTACCTCAAGGATGTGATG
ACCCGACTGCCCACACACAAGGACAGCCGCATCGGGGAACTGTTGCCGCATCGGTGGCAGAGCGCCACGATCTGA

Protein sequence :
MNEPVDLQSMDEAQMRQMLQHLMSELKHKQTLLDKLSYEMAILKRLKFAAKTEALNADQRSLLEDALEEDLQAVDEEIEQ
LRSAEERSPRQQPKRLPLPAQLLRQEFTHEPEVTECCGQAMRRMGEDVAEKLDYTPGVFMVHRHVRGKWVCACCQTLKQQ
PVEAHIIDKGLATTGLLAQVLVAKYADHLPLYRQESIYARAGVPLARSTLAQWVGSCGVQLQPLVDALRQEVLAHSIVHA
DETPVQMLKRGSERDGKTHRAYLWAYTPGRHEDLKAVVYDFCESRAGKHAGEFLNGWRGTLLVDDFAGYKQLMGEHITEA
ACWAHARRKFFELHAANKSQIAEQALVQIGQLYEVERQASNVDGTERLRMRQQHSRPIVDKLHAWLSEHRSKVPEGSATA
RAIDYSLRRWQPLTRLLDNGQLPIDNNWIENQMRPVALGRKNWLFAGSLRAGQRAAAVMSLIQSAKLNGHDPHAYLKDVM
TRLPTHKDSRIGELLPHRWQSATI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EXB16 ABD94703.1 ISPpu14 transposase Orf3 Not tested ExoU island B Protein 1e-113 65
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 7e-139 60
tnpC AEZ06051.1 transposase Not tested Tn6167 Protein 6e-128 54
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-66 42
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 7e-73 41
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 9e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ajs_2916 YP_987132.1 transposase IS66 VFG1700 Protein 7e-67 42
Ajs_2916 YP_987132.1 transposase IS66 VFG1513 Protein 5e-59 41