|
Name : Ajs_1285 (Ajs_1285) Accession : YP_985585.1 Strain : Acidovorax sp. JS42 Genome accession: NC_008782 Putative virulence/resistance : Unknown Product : helicase domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG0553 EC number : - Position : 1357990 - 1360269 bp Length : 2280 bp Strand : - Note : PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rme:Rmet_2330 helicase-like protein DNA sequence : ATGTCCCTCGATCTCGAAACCACCGCCGCTGAAGCCACGCCCGTACAGGGCGAACTGCTCGATGCGGAATCTTCCCCTCT GACCCTGAGCCTTCAGGATTTTGTCGGCGAGTTCGGCGACGAACTACTCGACGCCCTCAACAGCGCTAATCCGCCGGTCT ATACCGGCCAACCGCAGGCGCACCGGCAACTGGTGGTCGCCAGCCTCAAGCGCAAGCTGTTCCCAGCCCAGGCCGAAGTC GTCCACGCCGCCGCCGAGCTGCTGATCGACCGTGGCGAACGTGCTGCGATCGTCAATGGCGAGATGGGCTGCGGCAAGAC GACCGTCGGCATTGCCACGGCCGCCGTGCTCAACGCCGAAGGCTATCGCCGCACTCTGGTGCTGTCGCCGCCCCACCTGG TTTACAAGTGGCGGCGCGAGATCCAGGAGACGGTGGCCGGTGCCAAGGTGTGGGTACTCAACGGGCCGGATACGCTCGTC AAGCTCATCAAGCTGCGCGAGCAGTTGGGCGTGCAGCCCACGGGCCAGGAGTTCTTCGTCCTGGGGCGCGTCAGGATGCG GATGGGCTTTCACTGGAAGCCTGTCTTCACCACGCGGCGCACCCGCCACGGCGACGTGGCGGCCTGCCCGGACTGCGGCA CGGTCATCACCGACCTCGACGGCGAGCCGGTCAACCCGATCGCGCTCCAAGCCGAGGAGTGCCGCAGGAAGTGCGGCCAC TGCGCCGCGCCCCTGTGGACACTGATCCGCCCGCGCAGTCTGTCCGGCAGCGACCAGTCCTCGGCCGTGCTGAAAGCCTT GAAGCGCATACCGACCATCGGAGAGGTCACCGCGCAGAAGCTGATGCAAAAGTTCGGTGACGGGTTCCTGGCGTCGATGC TCGGCGACAACATCCATGAGTTCATCAACCTCATGGATGGCAACGGCGAGCTGGTGTTTTCCGACCGTCAGGCCACGCGC ATGGAACGTGCGATGGCCAACATGGAGTTCGGCTTTGGCGAGGGCGGCTATCAGCCGTCCGAGTTCATCAAACGCTACCT GCCGCAAGGCACGTTCGACCTGCTCATCGCCGATGAGGCACATGAGTACAAGAACGGGGGCAGTGCCCAGGGCCAGGCCA TGGGCGTGCTGGCGGCGAAGGCTCGCAAGACCTTGCTGCTGACCGGCACGCTGATGGGCGGCTACGGCGACGACCTCTTT TATCTGCTGTTCCGCGCCCTTCCCGGGCGGATGATCGAAGACGGATATCGCCCGACCACGAGCGGCAGCATGACCTCGGC CGCGATGGCGTTCATGCGCGATCACGGTGTCTTGAAGGACATCTACTCCGAGAGCACCGGCACGGCGCACAAGACGGCCA AGGGCACCAAGGTATCGGTGCGCACGGTCAAGGCCCCGGGCTTCGGCCCCAAGGGCGTCTTGCGCTGCATCCTGCCGTTC ACGATCTTCCTCAAACTCAAGGACATCGGCGGCAACGTTCTGCCGCCGTATGACGAAGAGTTCCGTGAAGTCGCGATGGA CGTGGCGCAAGCTGCGGCCTACCGCGATCTGGCGGGTCGGCTGACCGCGGAGCTGAAACAGGCTCTGGCGCGACGCGATA CGACCTTGCTGGGTGTGGTCCTCAACGTGCTGCTGGCCTGGCCGGATTGCTGCTTCCGGTCGGAGACCGTGGTGCATCCG CGCACGCGCAACACCTTGGCGTTTGTCCCGGCTCAGTTCAACGAGTTCGAGATCAGCCCCAAGGAGCGTGAGCTGATCGA GATCTGCAAGGAAGAGAAGGCCCAGGGCCGCAAGGTCCTGGCCTACACGGTCTATACCGGCACACGCGACACGACCAGCC GGTTGAAGGTGCTGCTGGAGCAGGAAGGTTTTCGGGTGGCGGTGCTGCGCGCAAGCGTGGATGCCAGCCGTCGCGAAGAC TGGATTGCGGAGCAACTGGATCGTGGCATCGACGTGCTCATCACCAATCCCGAATTGGTCAAGACGGGGTTGGACCTGTT GGAGTTTCCGACGATCGTGTTCATGCAGTCGGGCTACAACGTGTATTCGCTTCAGCAGGCAGCACGCCGCTCCTGGCGCA TCGGGCAGAAGCAGCCGGTGCGCGTGATCTACCTCGGCTACTCCGGTTCCTCGCAGATGACCTGCCTGGAGCTGATGGCC AAGAAGATCATGGTCTCGCAGTCCACCTCGGGCGACGTGCCCGAATCCGGGCTGGATGTACTCAACCAGGACGGTGATTC CGTCGAGGTCGCACTGGCCCGGCAATTGGTCGCCGCCTGA Protein sequence : MSLDLETTAAEATPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQLVVASLKRKLFPAQAEV VHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLV KLIKLREQLGVQPTGQEFFVLGRVRMRMGFHWKPVFTTRRTRHGDVAACPDCGTVITDLDGEPVNPIALQAEECRRKCGH CAAPLWTLIRPRSLSGSDQSSAVLKALKRIPTIGEVTAQKLMQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATR MERAMANMEFGFGEGGYQPSEFIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKARKTLLLTGTLMGGYGDDLF YLLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIYSESTGTAHKTAKGTKVSVRTVKAPGFGPKGVLRCILPF TIFLKLKDIGGNVLPPYDEEFREVAMDVAQAAAYRDLAGRLTAELKQALARRDTTLLGVVLNVLLAWPDCCFRSETVVHP RTRNTLAFVPAQFNEFEISPKERELIEICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASRRED WIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKQPVRVIYLGYSGSSQMTCLELMA KKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF C71 | AAN62165.1 | conserved hypothetical plasmid protein | Not tested | PAGI-2(C) | Protein | 0.0 | 99 |
| ORF SG81 | AAN62302.1 | conserved hypothetical plasmid protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 89 |
| unnamed | ABR13404.1 | putative helicase | Not tested | PAGI-5 | Protein | 0.0 | 72 |
| RL063 | AAP84188.1 | plasmid related protein | Not tested | PAPI-1 | Protein | 0.0 | 71 |
| pph67 | CAI36108.1 | superfamily II DNA/RNA helicase | Not tested | PPHGI-1 | Protein | 0.0 | 70 |
| yea | AAW83099.1 | Yea | Not tested | GGI | Protein | 9e-177 | 50 |
