Gene Information

Name : Pnap_3958 (Pnap_3958)
Accession : YP_984174.1
Strain : Polaromonas naphthalenivorans CJ2
Genome accession: NC_008781
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4222366 - 4223040 bp
Length : 675 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGTATTCTGATTGCCGAAGACGACCAGGTTCTGGCCGACGGCCTGCTGCGCACCCTGCGCGCGTCCGGCGCCGCGGC
AGACCATGTGGCCAGCGGCACCGAGGCCGACGCCGCGCTGCTGACCAACACCGAATTCGACCTGCTGATCCTGGACCTGG
GCCTGCCGCGCATGCACGGGCTGGAAGTGCTCAAGCGCCTGCGCGCGCGCGGATCGACACTGCCGGTGCTGATCCTGACG
GCGGCCGACAGCGTCGAAGAGCGTGTCAAGGGGCTGGACTACGGCGCCGACGACTACATGGCCAAGCCGTTTTCGCTGCA
GGAACTCGAAGCGCGGGTGCGCGCCCTGGTGCGGCGCGGCATGGGCGGCGGCAGCAGCACCATCAAGCACGGCCCGCTGG
TGTATGACCAGGCCGGCCGCGTGGCCACGATTGACGGCCATATGGTCGAGCTGTCGGCGCGCGAGCTGGGCCTGCTCGAA
GTGCTGCTGCAGCGCGCCGGCCGCCTGGTCAGCAAGGACCAGCTGGTCGAGCGCCTGTGCGAATGGGGCGAGGAAGTCAG
CAACAACGCCATCGAGGTGTACATCCACCGGCTGCGCAAGAAAATCGAAAAAGGGCCGGTGCGCATCGCCACCGTGCGCG
GGCTGGGTTATTGCCTCGAAAAGATTCCAGGCTGA

Protein sequence : 
MRILIAEDDQVLADGLLRTLRASGAAADHVASGTEADAALLTNTEFDLLILDLGLPRMHGLEVLKRLRARGSTLPVLILT
AADSVEERVKGLDYGADDYMAKPFSLQELEARVRALVRRGMGGGSSTIKHGPLVYDQAGRVATIDGHMVELSARELGLLE
VLLQRAGRLVSKDQLVERLCEWGEEVSNNAIEVYIHRLRKKIEKGPVRIATVRGLGYCLEKIPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-38 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pnap_3958 YP_984174.1 two component transcriptional regulator BAC0487 Protein 2e-36 46
Pnap_3958 YP_984174.1 two component transcriptional regulator BAC0083 Protein 1e-34 44
Pnap_3958 YP_984174.1 two component transcriptional regulator NC_002516.2.879194.p Protein 6e-33 43
Pnap_3958 YP_984174.1 two component transcriptional regulator BAC0638 Protein 3e-27 43
Pnap_3958 YP_984174.1 two component transcriptional regulator BAC0197 Protein 1e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pnap_3958 YP_984174.1 two component transcriptional regulator VFG0473 Protein 1e-39 44
Pnap_3958 YP_984174.1 two component transcriptional regulator VFG1390 Protein 8e-33 41
Pnap_3958 YP_984174.1 two component transcriptional regulator VFG1389 Protein 8e-28 41