Gene Information

Name : Pnap_3481 (Pnap_3481)
Accession : YP_983699.1
Strain : Polaromonas naphthalenivorans CJ2
Genome accession: NC_008781
Putative virulence/resistance : Virulence
Product : sugar transferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 3694929 - 3695489 bp
Length : 561 bp
Strand : -
Note : PFAM: sugar transferase; KEGG: rfr:Rfer_1263 sugar transferase

DNA sequence :
ATGAAGCGAATGTTTGACCTTCTGCTTGCCCTGGCGGCGGCTGTTGTTCTGGCCGTGCCGGTATTGCTGGTCGCGGTATT
GGTGCGATTGACCTCGCCCGGCCCGGCCCTGTACTGGTCTGACCGGGTAGGGCGGCACAACAAGATTTTCAAAATGCCCA
AGTTCCGCAGCATGCGGGTCGGCACGCCCGCCGTGGCCACGCACCTGCTGGCCAACCCCAAGGCGCACCTCACGCCCATC
GGCAGCTTTTTGCGCAAGAGCAGCCTGGACGAGCTGCCCCAGTTGTGGAGCATCCTGGTGGGCGACATGAGCTTTGTCGG
TCCGCGGCCCGCGCTTTTCAACCAGCATGACCTGATCGAGTTGCGAACCCGGCTCGGCGTGCATGAACTGGTGCCGGGGC
TGACAGGCTGGGCGCAGATCAACGGACGCGACGAGTTACCCATTCCTGACAAGGTCAGGCTGGATGTGGAGTATCTTCAA
CGGCAGTCGCTGTGGTTTGACCTGCGCATTTTGTGGCTGACATTTGTGAAGGTGCTTCGGCGCGATGGAGTGGCCCACTG
A

Protein sequence :
MKRMFDLLLALAAAVVLAVPVLLVAVLVRLTSPGPALYWSDRVGRHNKIFKMPKFRSMRVGTPAVATHLLANPKAHLTPI
GSFLRKSSLDELPQLWSILVGDMSFVGPRPALFNQHDLIELRTRLGVHELVPGLTGWAQINGRDELPIPDKVRLDVEYLQ
RQSLWFDLRILWLTFVKVLRRDGVAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 2e-31 50
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 2e-30 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pnap_3481 YP_983699.1 sugar transferase VFG1369 Protein 7e-30 50
Pnap_3481 YP_983699.1 sugar transferase VFG1309 Protein 2e-32 45