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Name : Pnap_3335 (Pnap_3335) Accession : YP_983553.1 Strain : Polaromonas naphthalenivorans CJ2 Genome accession: NC_008781 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 3532055 - 3533389 bp Length : 1335 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTAGACATCAACCTGCTCCGTAAAGACCTGCCCTCGGCCATCGCCCGCCTGGAGACCCGCAAGAGTCCGCAAACCTT CCTCAACGTCGAGGCCTTCCAGACCCTTGAGGCCGAACGCAAGGCCGTGCAGATCAGGACCGAAGAGCTGCAAGGCCAGC GCGGCACCCTGTCCAAACAAATCGGCCAGCTCAAGTCCAAGGGCGAAGACGCCAGCGCCGTGATGGCGCTGGTCAGCCAT TCCAAGGCCGAACTCGAATCGTCGGCCAAGCGCCTTGAGCAGATCCAGACGGAAATGCAGGCATTGCTGCTGGCCGTGCC GAACCTGCCGCACGACAGCGTGCCGCAGGGCATCGGCGAGGCGGGAAACGTCGAGGTGCGCAAGTGGAGCCCGTTCGAAG GCCTGGGCGGCGAGCCCGCCGCCTTGAGCTTCGAGCCCAGGGACCATGTCGATGTGGGCCAGCCGCTGGGGCTGGACTTC GAGCTGGGCACGAAGCTGACCGGCTCGCGCTTTACCGTGATGAAAGGCCCGCTGGCGCGCCTGCACCGTGCGCTGTCGCA ATTCATGCTCGACGTGCAGACGGCCGAGCATGGCTACACCGAATGCTATGTGCCCTACATCGTCAACAGCGACTCGCTGC GCGGTACCGGCCAGTTGCCCAAGTTCGAGGAAGACCTGTTCGCGGCCAGAAAAGGCGGCCAGGAAGGCCAGGCCGAGAAT GCCGCGCTGTACCTGATTCCCACGTCCGAGGTGCCGCTGACCAATTTCGTGCGCGATGAAGTCGTGCCGGAAGCGCAACT GCCGCTCAAATTCACCGCCCACACGCCGTGCTTTCGCTCCGAGGCCGGCAGCTACGGGCGCGACACGCGCGGCATGATCC GCCAGCACCAGTTCGACAAGGTCGAAATGGTGCAGGTCGTGCATCCCGAGAAAAGCTACGAAGCGCTGGAGGCCATGACC GGCCACGCCGAGGTCATCCTGCAAAAGCTCGGCCTGCCGTACCGCGTGATGCTGCTGTGCACCGGCGACATGGGTTTTGG CGCGACCAAGACCTACGACCTGGAAGTGTGGCTGCCGGCGCAGAGCACCTACCGCGAGATCAGTTCGGTGTCCAACTGCG AAGCCTTCCAGGCCCGCCGCCTGCAGGCTAGGTTCAAGAACGCGCAGGGCAAGAACGAGTTCGTCCACACCCTGAACGGC TCGGGCCTGGCCGTGGGCCGCACACTGGTCGCGGTGCTTGAAAACTACCAGCGCGCCGACGGCGGCGTCGATATTCCGGC GGTGCTGCAACCCTACATGGGCGGCATGACGACTCTTTCTTTGCCAGCGGCCTGA Protein sequence : MLDINLLRKDLPSAIARLETRKSPQTFLNVEAFQTLEAERKAVQIRTEELQGQRGTLSKQIGQLKSKGEDASAVMALVSH SKAELESSAKRLEQIQTEMQALLLAVPNLPHDSVPQGIGEAGNVEVRKWSPFEGLGGEPAALSFEPRDHVDVGQPLGLDF ELGTKLTGSRFTVMKGPLARLHRALSQFMLDVQTAEHGYTECYVPYIVNSDSLRGTGQLPKFEEDLFAARKGGQEGQAEN AALYLIPTSEVPLTNFVRDEVVPEAQLPLKFTAHTPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVHPEKSYEALEAMT GHAEVILQKLGLPYRVMLLCTGDMGFGATKTYDLEVWLPAQSTYREISSVSNCEAFQARRLQARFKNAQGKNEFVHTLNG SGLAVGRTLVAVLENYQRADGGVDIPAVLQPYMGGMTTLSLPAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-98 | 52 |
