Gene Information

Name : Pnap_3105 (Pnap_3105)
Accession : YP_983325.1
Strain : Polaromonas naphthalenivorans CJ2
Genome accession: NC_008781
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3288249 - 3288908 bp
Length : 660 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_3674 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGCCTGCTGCTGGTAGAAGACGACGCCATGATCGGCGAGGCGGTGCTGCAGGTGCTGCGCGCCGAGCATTACGCCGT
GGACTGGGTGCGCGATGGCGTCATGGCCGACGCGGCGCTGCGCAGCGAACAATACGACCTGGTGCTGCTCGACTTGGGCC
TGCCCAAGCGCGACGGCCTGGACGTGCTGCGCGCGCTGCGCGCCCGGCGCGCGAGCGTTCCGGTGCTGGTCGCCACGGCG
CGCGATGCCGTCGGCGACCGCATCGCCGGGCTCGATGCCGGCGCCGACGACTACGTGGTCAAGCCCTACGACATCGACGA
GCTGCTGGCGCGCATTCGCGCCCTGCTGCGCCGCAGCGCCGGCCGGGGCGAGCCGGTGTTCGAGCACAAGGGTGTGAGCC
TGAACCCGGCCACCCGCGAAGCCACGGTGCACGGCCAGCCGGTGTCGCTCTCGGCGCGCGAATGGGCGGTGCTGGAGCCG
CTGCTGGCCCGCCCCGGCGCGGTGCTGTCGCGCGCCCAGCTGGAAGAAAAGCTGTTCAGCTGGAAGGACGATGTCAGCAG
CAACGCGGTCGAGGTGTATATCCACGGCGTTCGCAAAAAGCTCGGCAACGACTTCATCCAGACCGTTCGCGGCCTGGGTT
ACGTGGTGCCCAAGGAATGA

Protein sequence : 
MRLLLVEDDAMIGEAVLQVLRAEHYAVDWVRDGVMADAALRSEQYDLVLLDLGLPKRDGLDVLRALRARRASVPVLVATA
RDAVGDRIAGLDAGADDYVVKPYDIDELLARIRALLRRSAGRGEPVFEHKGVSLNPATREATVHGQPVSLSAREWAVLEP
LLARPGAVLSRAQLEEKLFSWKDDVSSNAVEVYIHGVRKKLGNDFIQTVRGLGYVVPKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-26 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pnap_3105 YP_983325.1 two component transcriptional regulator BAC0487 Protein 8e-28 44
Pnap_3105 YP_983325.1 two component transcriptional regulator NC_002516.2.879194.p Protein 4e-18 41
Pnap_3105 YP_983325.1 two component transcriptional regulator BAC0197 Protein 7e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pnap_3105 YP_983325.1 two component transcriptional regulator VFG0473 Protein 5e-29 43
Pnap_3105 YP_983325.1 two component transcriptional regulator VFG1390 Protein 1e-19 42