Gene Information

Name : Pnap_1889 (Pnap_1889)
Accession : YP_982120.1
Strain : Polaromonas naphthalenivorans CJ2
Genome accession: NC_008781
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 2012582 - 2013298 bp
Length : 717 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter related

DNA sequence : 
ATGGGTGAAGTTTCTTCCAGGCTGTCTGGGTCATTGGAGCCTGCCAGTTCTCCAATTGTTTGCGTTGAGCATGTTTTCAA
GTCGGTCACCGACTCGACCGGCACCTTGAGCATTTTGCGCGACATTGACTTTGCGCTGAATGCGCGTGAAACCGCCGCCA
TTGTCGGCGCATCGGGCTCGGGCAAAAGCACGCTGCTGACCATCATCGCCGGGCTGGACACGCCCACGAAGGGCACGGTG
CGGCTGGCGGGCCAGGATATCTTTGCGCTCAGCGAGGACGACCGCGCGGCCCTGCGGGCGCAAAAAGTCGGTTTCGTGTT
CCAGAGCTTTCAGCTCATGGCCAATTTGACGGCGCTGGAAAATGTCATGCTGCCGCTCGAACTCTCTGGCGTCAAACAGG
CCAGGGCGCTGGCGAGCGACATGCTCAAGCGGGTCGGCTTGAGCGAGCGGCTCGGCCACTACCCGAAGGTGCTGTCGGGC
GGTGAGCAGCAGCGCGTGGCGCTGGCGCGCGCCTTTGTCGTCAAGCCGGCGGTGCTGCTGGCCGACGAGCCGACCGGCAG
CCTGGACTTTGCCACCGGCGAGACGGTGATGAAGCTGATGTTCGAGCTGAACCAGGAACTCGGCACGACCTTGGTGCTGG
TCACGCACGACCCGGCCATTGCGGCGCGCTGCCAGCGGCGCATCACCATCGAAGCCGGGCAGGTCGTGGTTTCATGA

Protein sequence : 
MGEVSSRLSGSLEPASSPIVCVEHVFKSVTDSTGTLSILRDIDFALNARETAAIVGASGSGKSTLLTIIAGLDTPTKGTV
RLAGQDIFALSEDDRAALRAQKVGFVFQSFQLMANLTALENVMLPLELSGVKQARALASDMLKRVGLSERLGHYPKVLSG
GEQQRVALARAFVVKPAVLLADEPTGSLDFATGETVMKLMFELNQELGTTLVLVTHDPAIAARCQRRITIEAGQVVVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-33 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 45
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pnap_1889 YP_982120.1 ABC transporter-like protein NC_008702.1.4606598. Protein 5e-37 50
Pnap_1889 YP_982120.1 ABC transporter-like protein NC_012469.1.7686878. Protein 9e-44 47
Pnap_1889 YP_982120.1 ABC transporter-like protein NC_012469.1.7685735. Protein 4e-36 41
Pnap_1889 YP_982120.1 ABC transporter-like protein CP001581.1.gene598.p Protein 8e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pnap_1889 YP_982120.1 ABC transporter-like protein VFG2059 Protein 7e-15 43