|
Name : Pnap_1359 (Pnap_1359) Accession : YP_981595.1 Strain : Polaromonas naphthalenivorans CJ2 Genome accession: NC_008781 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1445917 - 1448529 bp Length : 2613 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGCAAAAAGACACACTCAAACCCGGCGAAGCACCGGTGCGGGCCGCCCCCCACACGCCGATGATGACCCAGTACCACGC CATCAAGGCCGAGTATCCCGACACGCTGGTGTTCTACCGCATGGGCGACTTCTATGAGGTTTTCTACGCCGATGCCGAGA AAGCCTCCAGCCTGCTCGACATCACCCTGACCAAACGCGGCCAGTCGGCGGGCGAACCGGTCGTCATGGCGGGCATCCCG TTTCACGCGCTCGAAGGCTACCTGGCCAAGCTCATCAAGCTGGGCGAGTCGGTGGCGATTTGCGAGCAGGTCGGCGACGT GGCGACGGCCAAGGGGCCGGTCGAGCGAAAAGTGGTGCGCGTGGTCACGCCCGGCACATTGACCGACACCGAACTGCTGA GCGACAAGACCGAATCCATCCTGCTGGCCGTGCACCAGGGCGCGCGCAACACCTGCGGCCTGGCCTGGCTCAGCGTGACG CAGGGCGAGATCCACCTGGCCCATTGCGCCAACGGCGAGCTGGAAACCTGGCTGGCCCGGATTGCGCCCAGCGAACTGCT CTACAACGTCGATGCCACGCCCGCGTTCGAGCAGCGCCTGCAAACCCAGCGCTGCGCCGCCAGCGCCCGCCCGGCCTGGC AGTTTGACGCGGCCCTGGGCGTGCGGCGCCTGCTGGACCAGCTCAAGGTCGCTTCGCTGGCCTCGTGGCACGCCGAAGGG CTGAATGAAGCGCACGCCGCCGCCTCGGCGCTGCTGGGTTACGCCGAGCACACGCAGGGCCGCGCCCTGCCCCATGTGCA GGGCCTGCAGGTGGTGCGTTCGGGCGAGCTGATCGAGCTGCCGCCGGCCACGCGGCGCAACCTCGAACTGACGCAGACCC TGCGCGGCGAGGATTCGCCCACGCTGTTCTCGCTGCTGGACACCTGCACCACCGGCATGGGCAGCCGGGCGCTGAAAAGC TGGCTGCTCAGCCCGCGCCGCGACCGCGCCCAGGCAGCAAGCCGCTTAGAGGCCATCACGCAATTGCGCAGCGGCGCGCA GCAAACCTTGCGCACCCAACTCAAGGGCTGCAGCGACGTCGAGCGCATCACCGCCCGCATCGCGCTGCGCCAGGTGCGCC CGCGCGAACTCGTGGCGCTGCAGCTGACGCTACAAAAAGCAGAGCTGCTCACGCCCGTGGATAGTGCGCAAATACCTCTT TTGACCACTATTTTCGAGGATTTGCAGCCGCCCCTTGGCTGCGCCGAACTGCTGGGCCAGTGCATCCTGGACGAGCCGGC CGCGCTGATCCGCGACGGCGGCGTCATCAACCACGGCCTTGATGCCGAACTCGACGAGCTGCGCGCCATCCAGACCAACT GCGACGGCTTTCTGCTCGACCTGGAAATCCGCGAGAAAGCCCGCACCGGCATTGCCAACCTGCGCGTGCAGTTCAACAAG GTGCACGGCTTTTACATCGAGGTCACGCAGGGCCAGCTGGACAAGGTGCCGGCCGACTACCGCCGCCGCCAGACGCTGAA GAATGCCGAGCGCTACATCACGCCCGAACTGAAAACCTTCGAGGACAAGGCGCTGTCGGCGCAGGAACGCGCGCTGGCGC GCGAGAAGTGGCTGTACGAGCAGTTGCTCGACCAACTGCAGGAGTTCGTCCCCGCCCTGAGCCGGCTGGCGCGCGCCATT GCCGCGCTCGATGCGCTGTGCGCGCTGGCCGAGCGCTCGCTGACGCTGAACTGGTGCGCGCCAGTATTTGTGAAGGAGCC GTGCATCGCCATCGGCCAGGGCCGGCATCCGGTGGTGGAGGCGCGGCTGGCAGAGACGGGCGGCGGCGCCTTCATCGCCA ACGACTGCAGCCTGACTGGCAAAAGCCGCATGCAGATGATCACCGGCCCCAACATGGGCGGCAAATCGACCTACATGCGG CAGGTCGCGCTGATCGTGCTGCTGGCCAGCGTGGGCTCCTACGTTCCCGCCAGCGCCTGCCGGCTCGGGCCGATAGACGC CATCCACACCCGCATCGGCGCGGCCGACGACGTGGCCAACGCGCAATCGACCTTCATGCTGGAGATGCTGGAGGCCGCGC AGATTTTGCATGCCGCCACTCCTTATTCGCTGGTGCTGATGGACGAGATCGGGCGCGGCACCTCGACCTTCGACGGGCTG GCGCTGGCCGGCGGCATTGCCGCTTATCTGCACAACAAGGCGCAGGCCTTCACGCTGTTCGCCACGCATTACTTCGAGCT GACCGAGTTCGCGGCCCAGCACCACGGCGCCATGAATGTGCATGTCAGCGCGGTCGAGTCGGGCAGCGACATTGTGTTTT TGCACCACATCGAGCCCGGCCCGGCCAGCAAGAGCTACGGCATCGCGGTCGCCAAGCTGGCCGGCGTTCCCGCCGCCGTC GTCAACCATGCGCGCCATGCGCTGGCCGCGCTGGAGGCCCAGCAAAGCCAGGCCAGCGCCCAGGTGGACCTGTTCGCCGC GCCGCCCGAAGCGCCGGCATCCGGGCAAACCGCTATTGACAAGGCGCTGGCGAGCATAGACCCTGATATCCTGAGCCCCC GAGAAGCGCTTGAAGCGCTTTACCAACTAAAAAAACTGGCCAGCGCCGCCTGA Protein sequence : MQKDTLKPGEAPVRAAPHTPMMTQYHAIKAEYPDTLVFYRMGDFYEVFYADAEKASSLLDITLTKRGQSAGEPVVMAGIP FHALEGYLAKLIKLGESVAICEQVGDVATAKGPVERKVVRVVTPGTLTDTELLSDKTESILLAVHQGARNTCGLAWLSVT QGEIHLAHCANGELETWLARIAPSELLYNVDATPAFEQRLQTQRCAASARPAWQFDAALGVRRLLDQLKVASLASWHAEG LNEAHAAASALLGYAEHTQGRALPHVQGLQVVRSGELIELPPATRRNLELTQTLRGEDSPTLFSLLDTCTTGMGSRALKS WLLSPRRDRAQAASRLEAITQLRSGAQQTLRTQLKGCSDVERITARIALRQVRPRELVALQLTLQKAELLTPVDSAQIPL LTTIFEDLQPPLGCAELLGQCILDEPAALIRDGGVINHGLDAELDELRAIQTNCDGFLLDLEIREKARTGIANLRVQFNK VHGFYIEVTQGQLDKVPADYRRRQTLKNAERYITPELKTFEDKALSAQERALAREKWLYEQLLDQLQEFVPALSRLARAI AALDALCALAERSLTLNWCAPVFVKEPCIAIGQGRHPVVEARLAETGGGAFIANDCSLTGKSRMQMITGPNMGGKSTYMR QVALIVLLASVGSYVPASACRLGPIDAIHTRIGAADDVANAQSTFMLEMLEAAQILHAATPYSLVLMDEIGRGTSTFDGL ALAGGIAAYLHNKAQAFTLFATHYFELTEFAAQHHGAMNVHVSAVESGSDIVFLHHIEPGPASKSYGIAVAKLAGVPAAV VNHARHALAALEAQQSQASAQVDLFAAPPEAPASGQTAIDKALASIDPDILSPREALEALYQLKKLASAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 2e-147 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pnap_1359 | YP_981595.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 3e-163 | 49 |
