Gene Information

Name : ctrD (NMC0058)
Accession : YP_974200.1
Strain : Neisseria meningitidis FAM18
Genome accession: NC_008767
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export ATP-binding protein CtrD
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : 3.6.3.38
Position : 70349 - 70999 bp
Length : 651 bp
Strand : +
Note : -

DNA sequence : 
ATGATTTCAGTTGAACACGTTTCCAAACGCTATCTGACCCGCCAAGGTTGGCGGACAGTCTTGCACGATATTAGCTTCAA
AATGGAGAAGGGCGAGAAAATCGGTATTCTCGGCCGCAACGGTGCAGGTAAATCGACGCTCATCCGTTTGATCAGTGGCG
TTGAGCCGCCGACCACGGGTGAAATCAAGCGGACAATGAGTATTTCTTGGCCTTTGGCATTCTCCGGTGCGTTTCAAGGC
AGTCTGACCGGTATGGACAATTTGCGTTTCATCTGCCGGATTTACAATGTCGATATCGATTATGTGAAGAACTTTACCGA
AGAGTTTTCCGAGTTGGGGCAATATCTTTACGAGCCGGTCAAGCGTTATTCTTCAGGTATGAAGGCGCGTTTGGCATTTG
CTTTGTCGTTGGCGGTAGAGTTTGATTGCTATTTGATTGACGAAGTGATTGCAGTTGGTGACTCGCGTTTTGCCGATAAA
TGTAAGTACGAGTTGTTTGAAAAGCGCAAAGACCGTTCCATCATCTTGGTGTCGCACAGCCACAGCGCCATGAAGCAATA
TTGCGATAATGCGATGGTGCTGGAAAAAGGGCATATGTACCAGTTTGAAGATATGGACAAAGCCTACGAATATTATAATT
CGCTGCCTTAA

Protein sequence : 
MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGKSTLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQG
SLTGMDNLRFICRIYNVDIDYVKNFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 6e-100 99
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 6e-44 48
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-44 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ctrD YP_974200.1 capsule polysaccharide export ATP-binding protein CtrD VFG0258 Protein 2e-100 99
ctrD YP_974200.1 capsule polysaccharide export ATP-binding protein CtrD VFG0696 Protein 9e-86 82
ctrD YP_974200.1 capsule polysaccharide export ATP-binding protein CtrD VFG2563 Protein 3e-63 59
ctrD YP_974200.1 capsule polysaccharide export ATP-binding protein CtrD VFG1449 Protein 2e-44 48