|
Name : lysS (NMC1361) Accession : YP_975360.1 Strain : Neisseria meningitidis FAM18 Genome accession: NC_008767 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1350587 - 1352098 bp Length : 1512 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAGCGAACAAAACCATCCGCAAACCGAGCCGCAGTTGGACGAAAACCAAATCATCGCCCTGCGCCGCGAAAAACTGCA CAACATCCGCCAACAGCGCAACGCCTATCCCAACGACTTCAAACGCGACAGCTTCGCCGCCGATTTGCACGCCCAATACG GCGAAATCGGCAAAGAAGAACTCGATCCGCAAGGCATTCCCGTCAAAGTGGCCGGCCGCATGATGCTGAAGCGTCAAATG GGCAAGGCGAGCTTTGCCACCATTCAAGACGTGTCCGGGCAAATCCAGCTTTATCTGAACAACAAAGGCGTGAGCCAAGA AGTTTTGGACGACTTCAACCATTGGGATTTGGGCGACATCGTCGGCGCGGAAGGCACTTTGTTCAAAACCAACCACGGCG AACTGACCGTACGCGTGTCCGACATCCGCCTGTTGTCCAAATCCTTGCGTCCGCTGCCGGACAAACACAAAGGCTTGAGC GATCAGGAAACCAAATACCGCCAACGCTATGTCGATTTGATTGCCAACGAAGAATCGCGCAATACCTTTATCAAACGCAG CCAAATCATCCAATCCGTGCGTAATTTTATGGTGGGCGAGCATTATCTCGAAGTCGAAACCCCGATGATGCACCCGATTC CCGGCGGCGCGACGGCAAAACCCTTCGTTACTCATCACAATGCCTTAGATATTCCGCTTTACCTGCGTATCGCGCCTGAG CTGTATTTGAAACGCCTGGTTGTCGGCGGCTTGGAACGCGTGTTTGAAATCAACCGCAGCTTCCGCAACGAAGGCATGTC CGTGCGCCACAACCCCGAATTTACGATGATTGAATTTTACGAAGCCTTCTCCGACTACGAACGTATGATGCAGATGGCGG AAGACATCATCCGCAACGCATCGCGCACAGTAAACGGTACGGCAAACATCACTTACAATGGCAAAGAAGTCGATTTGGAA AGCCCGTTCGAGCGTCTGACCATCCTCGAAGCCATCAAAAAATACAATCCGCACTACACCGACGAGCAGTTGAACGATGC GGAATGGCTGAAAAAAGAAATCGTCAAACACGGTGAAAGCCTGCCGCCGTCCCCGGGCATCGGCAGCCTGCAACTCGCGC TGTTTGAAGGTTGCGCCGAGGGCAAGCTGTGGAACCCGACTTTCATCATCGATTACCCGGTCGAAGTTTCCCCGTTGGCG CGCGCTTCGGATACCAAACAAGGTCTGACCGAACGTTTCGAATTGTTCGTTGTCGGCCGCGAACTGGCAAACGGCTATTC CGAGTTGAACGACCCCGAAGACCAAGCCGAACGCTTCAAAGCGCAAGTGGCGCAAAAAGACGCGGGCGACGACGAAGCGA TGCACTACGATGCCGACTACATCCGCGCGATGGAGTTCGGTCTGCCGCCGACTGGCGGTTGCGGTATCGGCATCGACCGC TTGGTAATGTTGCTGACCGATTCGCAAACCATCCGTGACGTGATTCTGTTCCCGCAGATGCGCCCCGAGTAA Protein sequence : MSEQNHPQTEPQLDENQIIALRREKLHNIRQQRNAYPNDFKRDSFAADLHAQYGEIGKEELDPQGIPVKVAGRMMLKRQM GKASFATIQDVSGQIQLYLNNKGVSQEVLDDFNHWDLGDIVGAEGTLFKTNHGELTVRVSDIRLLSKSLRPLPDKHKGLS DQETKYRQRYVDLIANEESRNTFIKRSQIIQSVRNFMVGEHYLEVETPMMHPIPGGATAKPFVTHHNALDIPLYLRIAPE LYLKRLVVGGLERVFEINRSFRNEGMSVRHNPEFTMIEFYEAFSDYERMMQMAEDIIRNASRTVNGTANITYNGKEVDLE SPFERLTILEAIKKYNPHYTDEQLNDAEWLKKEIVKHGESLPPSPGIGSLQLALFEGCAEGKLWNPTFIIDYPVEVSPLA RASDTKQGLTERFELFVVGRELANGYSELNDPEDQAERFKAQVAQKDAGDDEAMHYDADYIRAMEFGLPPTGGCGIGIDR LVMLLTDSQTIRDVILFPQMRPE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-125 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_975360.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 6e-126 | 52 |
