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Name : Pnap_4782 (Pnap_4782) Accession : YP_973933.1 Strain : Genome accession: NC_008761 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 19345 - 22434 bp Length : 3090 bp Strand : + Note : KEGG: pol:Bpro_1944 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like DNA sequence : ATGACCGAAGACCAACTCGAACAAGAAACCCTGGCCTGGCTTCAGGACGTGGGCTACACCTGCCACTGCGGCTACGACAT CGCGCCTGACGGTCCTGCGCCCGAGCGCAGCAGTTTCAGCCAGGCGCTGCTGCCCTTCCGGCTGCGCGAGGCCATCCACA AGCTCAATCCCGGCATCCCGACCCCTGCCCGCGAAGACGCCTTCAAGCAGGTTCTTGACTTGGGCATCCCGGCGCTGCTG AGCGCCAACCGGCATTTCCACAAGCTGCTGGTGGGCGGCGTGCCCGTGGAGTACCAGAAAGACGGCCAGACCCGGGGCGA CTTCGTGCGCCTGATCGACTGGGCGCAGCCGGCGCGCAACGAGTTTCTGGCGGTCAACCAGTTTTCCCTCAAAGGTGCGC ACCACACGCGCCGCCCCGACATCATCCTGTTCGTCAACGGCCTGCCCTTGGTGCTGCTCGAACTCAAGAATCCCGCCGAC CTCAACGCCAATGTGTGGAAAGCCTACGACCAGATCCAGACCTACAAGGCGCAGATCCCGGGCGTGTTCGAGTACAACGA AGTGCTGGTGATTTCGGACGGCACCGAGGCGCTGCTGGGGTCCTTGTCTAGCAGCAGCGAGCGCTTCATGGCCTGGCGCA CGATTGACGGCCAGGCGCTGGACCCGCTGGGCCAATTCAACGAGCTGCAGACCCTGGTGCGCGGCGTGCTGGCCCCGGCG TACCTGCTGGACTACCTGCGCTACTTCGTGCTGTTCGAGGACGACGGCCAGCTGGCCAAGAAAATCGCCGGCTACCACCA GTTCCATGCGGTCCGCTCGGCCATTACCCAGGTCGTGACCGCCTCTCGCCCCGGCGGCACCCACAAGGGCGGCGTGGTCT GGCACACCCAGGGCAGTGGCAAGAGCATCACCATGACCTGCTTTGCTGCTCGCGTGATGCAGGAGCCGGCGATGGAGAAC CCCACCATCGTGGTGATTACCGACCGCAACGACCTGGACGGCCAGCTCTTTGGCGTGTTCAGCCTGGCCCAGGATCTGCT GCGCGAGCAGCCGGTGCAGGTCAGCACGCGGCAGGATCTGCGGACCAGGCTGGCGAACCGGCCCTCGGGCGGCATCGTGT TCGCCACCATCCAGAAATTCATGCCGGGCGAGGATGAGGACACCTTCCCTACCCTGTCCGAGCGCCACAACATCGTGGTG ATTGCCGACGAGGCGCACCGCACCCAGTACGGCTTCGAGGCCAAGCTCAAGGGCAAGCCCGGACACGAGACCTACCAGGT CGGCTACGCCCAGCACCTGCGCGACGCGCTGCCCAACGCCACCTTCGTGGCCTTCACCGGCACCCCGGTCAGCAGTGAAG ATCGCGACACGCGCGCCGTGTTCGGCGACTACATCTCGGTCTATGACATGCAGCAGGCCAAGGAGGACGGCGCCACGGTC GCCATCTACTACGAGTCGCGCCTGGCCAAGTTGAAGCTCAAGGAAGAAGATTTTTCGCTGATCGACGAGGAGGTCGATGA GCTGGCCGAAGACGAGGAGGAAAGCACCCAGGCCAAGCTCAAAAGCCGCTGGGCTGCCCTGGAGAAGGTGGTCGGCGCTG AACCGCGCGTGGCCAGCGTGGCGGCCGACCTCGTGGCGCATTTCGAGGAGCGCAACAAGGCCCAGAGCGGCAAGGCCATG ACGGTGGCCATGAGCCGCGACATCTGCGTGCATCTGTACAACGAGATCGTCAAGCTGCGCCCGGACTGGCACGACCCGGA TCCAGAAAAGGGCGCCATCAAGATCGTGATGACCGGGTCCAGCAGCGACAAGGCGCTGCTGCGCCCGCACATCTACAGCG CCCAGGTCAAGAAACGCCTGGAAAAGCGCTTCAAGGATCCGGCCGACCCGCTGCGCCTGGTCATCGTGCGCGACATGTGG CTCACCGGCTTTGACGCGCCGTGCGTGCATACCCTCTACGTGGACAAGCCCATGAAGGGCCACAACCTGATGCAGGCGAT TGCCCGGGTCAACCGCGTGTTCAAGGACAAGCAGGGCGGCCTGGTGGTGGACTACATCGGCATCGGCAATGAACTCAAAG CCGCCATGAAGGAATACACCCAGAGCAAAGGCCGGGGTCGGCCCACGGTGGACGCGCATGAAGCGTATAGCGTGCTGGCC GAAAAACTCGACATCCTGCAAACGATGCTGCACGGCTACGACTACAGCGGTTTTCTGACCGGCGGCCACAAGGCGCTGGC CGGCGCCGCCAACCATGTGCTGGGCGCCCAGGACGGCAAGAAGCGCTTTGCCGACACGGCCCTACAGATGAGCAAGGCGT TCAGCCTGTGCTGCACGCTGGACGAGGCCAAGGCGGTGCGCGAGGAGGTGGCCTTTTTGCAGGGCGTCAAGGTCATCCTG ACCAAAAAGGATTTGAGCGCGCAAAAGAAGACCGACGAGCAGCGCGACCTGGCCATCCGGCAGATCATCAACTCGGCCGT GGTGTCGGACAGCGTGGTGGACATTTTCGATGCCGTCGGGCTGGACAAGCCCAACATCGGACTGCTGTCCGACGAGTTCC TGGCGCAGGTGAAAAACCTGCCGGAGAAGAACCTGGCGGTGGAATTGCTGGAGCGGCTGCTGGAGGGCGAGATCAAGAGC CGGTTTGCCAGCAACGTGGTGCAGGAGAAGAAGTTTTCCGAGCTGCTTGCCGGTGTCATCAAGCGCTACCAGAATCGCTC CATCGAGACCGCCCAGGTCATGGAGGAGCTGGTGGCGATGGCCAGGAAGTTTCAGGAGGCGGCCAACCGAGGCGAAGCAC TGGGCCTCACCGAGGACGAGATCAAGTTTTATGACGCGCTGGCCACCAACGAATCGGCCGTGCGGGAACTGACCGATGAA ACCCTCAAGAAGATCGCCCATGAGCTGACCGAGAACCTGCGCCAAAACCTCAGCGTGGACTGGTCGGAGCGCGAGAGCGT GCGCGCCAGGCTGCGCCTGATGGTCAGGCGCATCCTGCGCAAATACAAGTACCCGCCCGACCTGCAGGATGCGGCGGTGG AACTGGTGCTGCAGCAGGCGCAGGCGCTAGGAACCGTATGGATGATCTAG Protein sequence : MTEDQLEQETLAWLQDVGYTCHCGYDIAPDGPAPERSSFSQALLPFRLREAIHKLNPGIPTPAREDAFKQVLDLGIPALL SANRHFHKLLVGGVPVEYQKDGQTRGDFVRLIDWAQPARNEFLAVNQFSLKGAHHTRRPDIILFVNGLPLVLLELKNPAD LNANVWKAYDQIQTYKAQIPGVFEYNEVLVISDGTEALLGSLSSSSERFMAWRTIDGQALDPLGQFNELQTLVRGVLAPA YLLDYLRYFVLFEDDGQLAKKIAGYHQFHAVRSAITQVVTASRPGGTHKGGVVWHTQGSGKSITMTCFAARVMQEPAMEN PTIVVITDRNDLDGQLFGVFSLAQDLLREQPVQVSTRQDLRTRLANRPSGGIVFATIQKFMPGEDEDTFPTLSERHNIVV IADEAHRTQYGFEAKLKGKPGHETYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYISVYDMQQAKEDGATV AIYYESRLAKLKLKEEDFSLIDEEVDELAEDEEESTQAKLKSRWAALEKVVGAEPRVASVAADLVAHFEERNKAQSGKAM TVAMSRDICVHLYNEIVKLRPDWHDPDPEKGAIKIVMTGSSSDKALLRPHIYSAQVKKRLEKRFKDPADPLRLVIVRDMW LTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKAAMKEYTQSKGRGRPTVDAHEAYSVLA EKLDILQTMLHGYDYSGFLTGGHKALAGAANHVLGAQDGKKRFADTALQMSKAFSLCCTLDEAKAVREEVAFLQGVKVIL TKKDLSAQKKTDEQRDLAIRQIINSAVVSDSVVDIFDAVGLDKPNIGLLSDEFLAQVKNLPEKNLAVELLERLLEGEIKS RFASNVVQEKKFSELLAGVIKRYQNRSIETAQVMEELVAMARKFQEAANRGEALGLTEDEIKFYDALATNESAVRELTDE TLKKIAHELTENLRQNLSVDWSERESVRARLRLMVRRILRKYKYPPDLQDAAVELVLQQAQALGTVWMI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 56 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 48 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 48 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 48 |
