Gene Information

Name : Aave_0449 (Aave_0449)
Accession : YP_968830.1
Strain : Acidovorax citrulli AAC00-1
Genome accession: NC_008752
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 485546 - 486208 bp
Length : 663 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGACCCCGATCTCGGGACTCGATCCCGTCTCGCTGGCGCTGGCGCTGATGCTGCTGGCGGTGCTGCCGTTCGCCGCCAT
GATCGTCACGTCCTACACCAAGGTGGTGGTGGTCCTGGGCCTGCTGCGCAACGCGCTCGGCGTGCAGCAGGTGCCGCCCA
ACATGGTGCTCAACGGCATCGCCATCATCATTTCGGTGTACGTGATGGCGCCGGTCGCCATGGAGGCTTCCGACCGCATG
CAGATGCTGCCGCCTTCCGCCCAAAGCTCCAACACCCAGCAGATGCTCGCTGCCGCCTCCGCCGCCCGTGAACCGTTCCG
CAAGTTCCTGGACAAGCATGCCGACGCCGCCGAGAAAGCGTTCTTCCTCAAGTCGGCCCAGGCGCTCTGGCCCGAGGAAC
GCGCCCGGTCGCTGCAGGCCGACGACCTCGTCGTGCTGGCGCCCGCCTTCCTGCTCACCGAACTCACGGCCGCCTTCCGC
ATCGGTTTCCTGCTGTACCTGGCCTTCATCATCGTGGAGCTGGTCATCGCCAACGTCCTGCTGGCCATGGGCCTATCCCA
GGTTTCCCCCACCAACGTCGCCATTCCCTTCAAGCTGCTGCTGTTCGTCGTGCTCGACGGATGGTCGCAGGTGATGCACG
GACTGGTCATGACCTACCGCTGA

Protein sequence : 
MTPISGLDPVSLALALMLLAVLPFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRM
QMLPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEERARSLQADDLVVLAPAFLLTELTAAFR
IGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLFVVLDGWSQVMHGLVMTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-62 67
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-62 67
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-61 65
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-61 65
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-61 65
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-61 65
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-61 65
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-61 65
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-47 48
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-40 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-33 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-33 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-39 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-39 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-39 41
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Aave_0449 YP_968830.1 type III secretion system protein VFG0394 Protein 8e-47 51
Aave_0449 YP_968830.1 type III secretion system protein VFG0044 Protein 3e-50 50
Aave_0449 YP_968830.1 type III secretion system protein VFG0188 Protein 6e-47 49