Gene Information

Name : Aave_3445 (Aave_3445)
Accession : YP_971776.1
Strain : Acidovorax citrulli AAC00-1
Genome accession: NC_008752
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 3806160 - 3807443 bp
Length : 1284 bp
Strand : -
Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4880 TRAP dicarboxylate transporter-DctM subunit

DNA sequence : 
ATGGCCATCACCCTCTTCGTTTCCGCCCTCCTGCTGATGGCGCTGGGCTTTCCCGTCGCGTTCGCGCTCGCCATGTCGGC
CGCCATCGCGGTCTTCGTGGGCGGGCGCTATCCGCAACTGATCGTGTTCAAGGAGATGTTCACGGGCATCGACAGCTTCC
CGCTGATGGCCGTGCCCTTCTTCATCCTCGCGGCCGAGATCATGTCCGGCGGCGCGCTCACCGTGGTGCTGCTGCGCTTC
GCCGCGCAGTTCGTGGGCCACCTGCGCGGGGGCCTGGGGCACGCCAACATCCTGTCGCTCACGCTGTTCTCGGGCATCTC
GGGCTCGGCCCTGGCCGACGCGGCGGGGCCCGGCTCGATGATGGTCAAGATGATGGACAAGGCGGGCTACTCGCGCGCCT
ACGCCGCCGCGCTCACCGCCAGCACGGCCATCGTGGGGCCCATCATCCCGCCCTCGATCATCATGATCATCTACGCGCTG
CAGGACGAGCAGGTCTCGGTCGGCGCGCTCTTCATCGCCGGCTTCGCGCCGGGCATCCTCATCGCCGTGGCCATGGCCAT
CGTCAACTGGCGCGTGTGCGTGCAGCGCGACTACCGCTCCCGCGAGCCGCGCCCGGGCGGCCGGGAAATGCTCGCCAACA
GCATCCGCGCCATTCCGGCCCTGATGCTGGTGGTGCTGATCCTGGTGGGCATCCGCTTCGGCATCTTCACGCCCACCGAG
GCCTCCGTGGTGGCCGTGTTCTACGCCCTGGTCTGCGGCAAGTGGATCTACCGCACGCTGGAGTGGAAGGCCCTGCCGCA
CATCGCCGCACGCTCCGCGCTGCTCACCGCCTCGGTGCTGCTGGTGGTGGCGGCCTCGGCCGCCTTCGCCTGGGTGCTGA
CGGTGGAAGGGGTGCCCCAGCGCCTGGCCGAGACGATCGTGGGCTGGAACCTCTCGCCCGTCACCTTCCTCATCGCGGTC
AACATCCTGCTGCTGCTCTTCGGCATCTTCATGGAGCCGCTGCCGGGCGTGATGATCCTCGTGCCCATCCTCGCGCCCAT
CTCGGCGGCGCTGGGCATCGACCCGATCCACTTCGCCATGGTGGTGATCGTCAACCTCACCCTGGGCATGATCACGCCGC
CGGTGGGCGGACTGCTGTTCGTCACCTCGGTCGCCACCAAGGTGCCGCTGGCGGCGCTCACGCGCGAACTGCCGCCGTTC
CTCGTGGCGCACCTGATCGTGCTGGGCCTGCTCACCTTCGTGCCCGCCATCTCCACCTGGCTGCCGCACGCACTGGGCTT
CTGA

Protein sequence : 
MAITLFVSALLLMALGFPVAFALAMSAAIAVFVGGRYPQLIVFKEMFTGIDSFPLMAVPFFILAAEIMSGGALTVVLLRF
AAQFVGHLRGGLGHANILSLTLFSGISGSALADAAGPGSMMVKMMDKAGYSRAYAAALTASTAIVGPIIPPSIIMIIYAL
QDEQVSVGALFIAGFAPGILIAVAMAIVNWRVCVQRDYRSREPRPGGREMLANSIRAIPALMLVVLILVGIRFGIFTPTE
ASVVAVFYALVCGKWIYRTLEWKALPHIAARSALLTASVLLVVAASAAFAWVLTVEGVPQRLAETIVGWNLSPVTFLIAV
NILLLLFGIFMEPLPGVMILVPILAPISAALGIDPIHFAMVVIVNLTLGMITPPVGGLLFVTSVATKVPLAALTRELPPF
LVAHLIVLGLLTFVPAISTWLPHALGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 1e-36 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-36 41
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 1e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Aave_3445 YP_971776.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 6e-37 41