Gene Information

Name : Aave_2709 (Aave_2709)
Accession : YP_971053.1
Strain : Acidovorax citrulli AAC00-1
Genome accession: NC_008752
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2977430 - 2978329 bp
Length : 900 bp
Strand : -
Note : PFAM: Integrase, catalytic region; KEGG: psp:PSPPH_A0089 ISPsy21, transposase orfB

DNA sequence : 
ATGACGGGGTTCATCGACGAACACCGCGCCAGGTACGGAGTCGAGCCGATCTGCAGGGTGCTGCCGATCGCTCCGTCGAC
CTACTACACGCACGCGGCTCGGCAGGCCGATCCGGAACTGCAGCCGAACCGCTGGTGGCGCGACCGCGCCATGGAGGCGG
AGGTTCGCCGGGTCTGGGACGAGAACAAGCAAGTCTACGGCGTGCGCAAGGTCTGGAAGCAGCTGTGCCGGGAAGGCTAC
CGGGTGGCGCGTTGCACGGTGGCACGACTGATGAAGCGGTTGGGCCTGCGCGGGGTCGTTCGCGGCAAGGTCGTGAAGAC
CAAACACAGCGACAAGGCGGTGCCGTGCCCGCGCGACCAGGTGAACCGGCAGTTCCGCGCCGACCGGCCCAACGCGCTGT
GGGTGAGCGACTTCACCTACGTCTCGACCTGGGCGGGTTTCGTGTACGTGGCCTTCGTGATCGACGTGTACGCCCGCCGG
ATCGTAGGCTGGAAGGTCTCCGGCTCGGCCCGGACCGACTTCGTCCTGGACGCGCTGGAGCAGGCACTCCACGCTCGTCG
CCCGACGCGGGGCGGGCTGATCCACCACAGCGATCGCGGCGTGCAGTACGTGTCGATCCGCTACACCGAGCGTCTGGCCG
AGGCCGGCATCGAGCCCTCGGTGGGCAGTGTCGGCGACAGCTACGACAATGCACTGGCCGAGACGATCAACGGCCTGTAC
AAGGCCGAGGTCATCCATCGGCGGTCCTGGAGGAACCTGCAGGACGTCGAACTGGCCACGCTGGAGTGGGTGGGCTGGTT
CAACCACAAGCGCCTGCTTGGCCCGATCGGCGACATCCCACCGGCCGAAGCAGAAGCGAACTACTATCAGCAGACTCGTG
AGATCGCCATGGCGGCGTGA

Protein sequence : 
MTGFIDEHRARYGVEPICRVLPIAPSTYYTHAARQADPELQPNRWWRDRAMEAEVRRVWDENKQVYGVRKVWKQLCREGY
RVARCTVARLMKRLGLRGVVRGKVVKTKHSDKAVPCPRDQVNRQFRADRPNALWVSDFTYVSTWAGFVYVAFVIDVYARR
IVGWKVSGSARTDFVLDALEQALHARRPTRGGLIHHSDRGVQYVSIRYTERLAEAGIEPSVGSVGDSYDNALAETINGLY
KAEVIHRRSWRNLQDVELATLEWVGWFNHKRLLGPIGDIPPAEAEANYYQQTREIAMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-64 68
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 9e-55 67
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-55 67
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-73 63
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-73 63
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 3e-71 63
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 4e-70 63
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-72 63
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-72 63
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-73 63
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-73 63
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-73 63
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-73 63
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-72 63
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-72 62
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-73 62
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 8e-70 62
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 8e-70 62
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 8e-70 62
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-70 61
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-47 61
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 9e-54 50
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-34 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Aave_2709 YP_971053.1 integrase catalytic subunit VFG1602 Protein 3e-70 61