|
Name : Dvul_2740 (Dvul_2740) Accession : YP_968178.1 Strain : Desulfovibrio vulgaris DP4 Genome accession: NC_008751 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 3196647 - 3197921 bp Length : 1275 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTCGATCTCAAACTTTTGCAGAAGAACCCCGAAGTGGTCGCCAAGGCACTCGCCATGCGCCATTCGGACATCGACAT CGCAACGTTCACCACGCTGGATACCCGTCGCAGGGCACTGCTCACCGAGGTGGAAAGCCTCAAGAGCGAACGCAACAAGG CCTCGGCTGAAGTGGCCAAGGCCAAGCGCGCGGGCGAAGACGCATCGGCACTCATCGAACGCCTTGGCGGTGTTTCAGAG CGCATCAAGGCGCTCGACCTCGAAGCGGAAGCGGTCAAGTCGGAACAGAACGACTGGATGCTGACCATCCCCAACATTCC GCACGAGAGCGTCCCCGAAGGCCGCGACGAGAACGACAACGTCGAAGTGCTCCGCTGGGGGACACCGCGCGCCTTCAGCT TCACTCCTCGCGAACACTGGGATATCGGTGTCGCCCTTGGCGGACTCGATTTCGAGCGTGCAGGCAAGCTCGCCGGCAGC CGGTTCACAGTCTACTGGAAGTGGGCCGCCCGGCTTGAACGCGCCCTTGCCAACTACTTCCTCGACACGCATATCAGTGC TAACGGCTACACCGAGGTGCTGCCCCCCTTCATGGTCAACCGCAAGACCATGACCGGCACGGGGCAACTGCCCAAATTCG AGGAGGATCTTTTCCGCCTTGAAAGCTGGGACTATTTCCTCATCCCCACCGCCGAGGTGCCCCTGACCAACCTGCACGCC GATGAGATACTCGAAGAGGGCGACCTCCCCCTCGGGTACACGGCGCAGACGCCCTGCTTCCGTTCCGAGGCGGGCAGCTA CGGCAAGGACACGCGAGGGCTCATCCGCCAGCATCAGTTCACCAAGGTGGAAATGGTGCGTTTTGCCCACCCCGAACGCT CGTTCGAGGAACTGGAGCGGATGAGGGGACATGCCGAAGCGCTGCTCCAGAACCTTGGCCTGCCCTACCGAGTGATCACC CTGTGCAGTGGCGATATGGGCTTTTCGGCCACCAAGACCTACGACCTCGAAGTCTGGCTGCCCGGTCAGGACAAGTACCG CGAGATTTCGTCGTGCTCCAACTGCGGCGACTTCCAGGCACGCAGGGCCAATATCCGCTTCCGGCCCGCCGGTGGCGGCA AGCCCGAATTCGTGCATACGCTGAACGGTTCCGGCCTTGCGGTGGGACGCACCCTTGTCGCCGTTCTCGAGAACTACCAG CAGGAAGACGGTTCCGTCATCGTGCCGGAAGTGCTGCGCCCTTACATGGGCGGCCTTGAACGCATTACGGCCTGA Protein sequence : MLDLKLLQKNPEVVAKALAMRHSDIDIATFTTLDTRRRALLTEVESLKSERNKASAEVAKAKRAGEDASALIERLGGVSE RIKALDLEAEAVKSEQNDWMLTIPNIPHESVPEGRDENDNVEVLRWGTPRAFSFTPREHWDIGVALGGLDFERAGKLAGS RFTVYWKWAARLERALANYFLDTHISANGYTEVLPPFMVNRKTMTGTGQLPKFEEDLFRLESWDYFLIPTAEVPLTNLHA DEILEEGDLPLGYTAQTPCFRSEAGSYGKDTRGLIRQHQFTKVEMVRFAHPERSFEELERMRGHAEALLQNLGLPYRVIT LCSGDMGFSATKTYDLEVWLPGQDKYREISSCSNCGDFQARRANIRFRPAGGGKPEFVHTLNGSGLAVGRTLVAVLENYQ QEDGSVIVPEVLRPYMGGLERITA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-113 | 59 |
