Gene Information

Name : Dvul_2403 (Dvul_2403)
Accession : YP_967846.1
Strain : Desulfovibrio vulgaris DP4
Genome accession: NC_008751
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2801625 - 2803028 bp
Length : 1404 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: dvu:DVU0539 sigma-54 dependent DNA-binding response regulator

DNA sequence : 
ATGCCAACGACATGTGACGAACACATCCTCATCGTCGATGACGAACCCGACTTCGCGCACGGACTGGCAAGACTGGTGAG
CAGGGACTTTCCGGCAGCCAGTGTCTCTGTGGCGCTTTCCGGCGCTGAGGCGCTGCACATCATCCAGGGCAGCGGGGTCG
CCCTGCTGCTCACCGACCTGCGGATGCCCGACATGGATGGAATGGAACTCATGCAGCAGGCCATGACCGTGGACCCCACG
ACTTCGGTCATCCTGCTCACGGCGCACGGTTCCATAGAGACGGCGGTCGCCGCCCTCAAGAACGGCGCATACGACTTCCT
CACCAAGCCCGTCCGTCGCGAAGAACTGCAAAGGACCCTCAACAAGGCACTGGAACGGATACGCATCCTCAAAGAGAACA
AACGGTTGCGTCAAATGATGCAACAAGGCTGCATCGAACGCCAGATGATAGGCGAGTCTCCGGTCATGCAACGCCTCAAG
GAGACTATCGCGGCCATCGCAGCCACGGACTACTCCGTGCTCATCAGGGGAGAATCAGGGACAGGCAAGGAACTCGTCGC
CGACATGCTGCACCGCCTCGGCAGCAGGAGGGAGCGCCCACTAGTCAAAGTGAACTGCCCCTCCATCCCCGACCAGCTTC
TGGAAAGTGAACTGTTCGGACACGTCAGAGGGGCATTCACGGGGGCAGACAGGGCTCGGCGCGGGCTCTTCATGTCAGCG
CAACGGGGAACGCTCCTGCTGGATGAAATCGGGGACATCGGTGAGGCACTCCAGACCAAGCTGCTCCGGGTCTTGCAGGA
GCGCGAGATTCGCCCTGTGGGGTCAAGCGCGAGCACCCTCGTGGATGTGCGTATCATCGCCAGCACCAACAGGGCCCTCG
AAGAACGCATCAAGCACGGACTCTTCCGGGAAGACCTCTTCTACAGGCTCAACGTGCTGACCATCCACACGCCTCCCCTC
CGAGAACGGCGCGACGACATCCCACTGCTGGCAGACCACTTCGTCGCGGCGACTTGCCGGGAGCTCTCCAGCCCTGTGAA
ACGCATCTCACCCGGTGCACTTGCCTGTCTTGCCGGAAGGGAGTGGCCCGGCAATGTCAGGGAACTACAGAACTACATCC
GCAGGCTCGTCGTCTTCTGCCCAGGAGACACCATCGACACCGCCCACCTTCGTCTTGTGGACGGCACGACCTGCCCGACG
ACGGTGGAGACGCCATCCCTTGTTCCCTACAAAGAGGCGAAGGGGGCTGTCGTGGAGGATTTCACCCGCCGTTACGTCGA
AGGCCTCTTGCGCCAGACGGGAGGCAACATATCCGAGGCGGCGCGACTTTCAGGCATCGAACGCGTGTCACTCCAGAAGA
TCCTGCGTCGTCTGGGCACTTCCGGAGACACGTTCAAAGGATAG

Protein sequence : 
MPTTCDEHILIVDDEPDFAHGLARLVSRDFPAASVSVALSGAEALHIIQGSGVALLLTDLRMPDMDGMELMQQAMTVDPT
TSVILLTAHGSIETAVAALKNGAYDFLTKPVRREELQRTLNKALERIRILKENKRLRQMMQQGCIERQMIGESPVMQRLK
ETIAAIAATDYSVLIRGESGTGKELVADMLHRLGSRRERPLVKVNCPSIPDQLLESELFGHVRGAFTGADRARRGLFMSA
QRGTLLLDEIGDIGEALQTKLLRVLQEREIRPVGSSASTLVDVRIIASTNRALEERIKHGLFREDLFYRLNVLTIHTPPL
RERRDDIPLLADHFVAATCRELSSPVKRISPGALACLAGREWPGNVRELQNYIRRLVVFCPGDTIDTAHLRLVDGTTCPT
TVETPSLVPYKEAKGAVVEDFTRRYVEGLLRQTGGNISEAARLSGIERVSLQKILRRLGTSGDTFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-69 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-69 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dvul_2403 YP_967846.1 Fis family transcriptional regulator BAC0467 Protein 3e-77 43
Dvul_2403 YP_967846.1 Fis family transcriptional regulator BAC0089 Protein 3e-86 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dvul_2403 YP_967846.1 Fis family transcriptional regulator VFG1214 Protein 1e-66 43