Name : lysS (Sputw3181_0896) Accession : YP_962300.1 Strain : Shewanella sp. W3-18-1 Genome accession: NC_008750 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1021858 - 1023360 bp Length : 1503 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGAACAAGTACAAGATGAAAACAAACTGATCGCCGAGCGTCGTGCCAAGCTAGACAGCATTCGCCCAAATTGTAG CGCTAATGCTCACCCTAATACCTTCCGTCGCACCCATAAAGCGGCTGAGTTACAGGAGAAATACGGCCAAAACACTAAGG AAGAACTCGAAGCCTTAGGTTTTAGAACCAGCATTGCTGGTCGTATCATGGCAAAACGTGGCCCATTCCTCGTAATTCAA GACGTGTCTGGTCGTATCCAAGCTTATGCTGAAAAGGGCGTTCAAGCGGATCTGAAGGATCGTTACCAAGGTCTGGATAT CGGTGACATCATCGGCGTAACTGGTCAGTTACACTTGTCTGGTAAAGGCGATCTGTACGTCAATATGGAAGAGTACCAAC TGCTGACCAAAGCACTGCGTCCACTGCCAGAGAAATTCCACGGCTTAACCGACCAAGAAACCCGTTACCGCCAACGTTAT GTTGACTTAATCGTTAACGAAGAATCTCGTCAAGCCTTCGTGATGCGCTCAAAAGTGGTTGCAGCTATCCGTAACTTCAT GATCAAAAAAGAGTTCATGGAAGTTGAAACCCCAATGATGCACGTGATCCCTGGCGGCGCTTCAGCCCGTCCATTTATCA CGCACCACAATGCGCTGGACATGCCAATGTACCTGCGTATCGCGCCAGAGCTATACCTCAAGCGTTTAGTGGTCGGTGGT TTTGAGCGTGTGTTCGAAATCAACCGTAACTTCCGTAACGAAGGTCTGTCGCCACGCCATAACCCAGAATTCACTATGAT GGAATTCTATATGGCTTACGCTGATTACAAAGATTTGATGGACTTAACCGAAGAACTGTTAAGCTCAATCGCGATCGAAT TGTTAGGCAGTGCGCAAATGCCATACGGCGAGCACACCGTTGATTTCGGCGGCCCATATGCCCGTCTGAGCATGTTAGAA GCGATTCAGAAGTACAATCCTGATAACGCGACTATCCAAGCCATGACCTACGAGCAAGTGAAAGATCTCGAATTTATGCG TGAATTGGCTATCAGCCTAGGTATCAAGATCGAGAAGTTCTGGACCTGTGGTCAGCTATTAGAAGAAATCTTCGGTGAAA CTGCTGAATGGCAATTAATGCAACCGACCTTCATCACTGGCTACCCAGCGGACATTTCGCCACTGGCACGTCGTAACGAT GACAATCACTTCATCACCGACCGTTTTGAATTCTTCATCGGTGGTCGTGAAGTAGCTAACGGTTTCAGCGAGTTAAATGA TGCTGAAGATCAAGACAGCCGCTTTAAAGCGCAGGTTGATGCCAAAGACGCGGGTGACGATGAAGCCATGTTCTACGATG CGGACTATATCACTGCACTGGAACACGGTTTACCACCAACAGCGGGTCAAGGTATTGGTATCGACCGTTTAGTGATGCTA TTCACTAACACTCATACAATCCGTGATGTGATCCTATTCCCTGCAATGCGCCCACAAGCCTAA Protein sequence : MTEQVQDENKLIAERRAKLDSIRPNCSANAHPNTFRRTHKAAELQEKYGQNTKEELEALGFRTSIAGRIMAKRGPFLVIQ DVSGRIQAYAEKGVQADLKDRYQGLDIGDIIGVTGQLHLSGKGDLYVNMEEYQLLTKALRPLPEKFHGLTDQETRYRQRY VDLIVNEESRQAFVMRSKVVAAIRNFMIKKEFMEVETPMMHVIPGGASARPFITHHNALDMPMYLRIAPELYLKRLVVGG FERVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKDLMDLTEELLSSIAIELLGSAQMPYGEHTVDFGGPYARLSMLE AIQKYNPDNATIQAMTYEQVKDLEFMRELAISLGIKIEKFWTCGQLLEEIFGETAEWQLMQPTFITGYPADISPLARRND DNHFITDRFEFFIGGREVANGFSELNDAEDQDSRFKAQVDAKDAGDDEAMFYDADYITALEHGLPPTAGQGIGIDRLVML FTNTHTIRDVILFPAMRPQA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-130 | 57 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
lysS | YP_962300.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-130 | 57 |