Gene Information

Name : Sputw3181_0461 (Sputw3181_0461)
Accession : YP_961866.1
Strain : Shewanella sp. W3-18-1
Genome accession: NC_008750
Putative virulence/resistance : Virulence
Product : sigma-54 dependent trancsriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 505859 - 507169 bp
Length : 1311 bp
Strand : +
Note : PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sdn:Sden_3661 sigma-54 factor, interaction region

DNA sequence : 
GTGAGAAGCCTAAGTATACGGATTGAAGGGCTAAATCTATCGGCGGATCTTATATGCAAAATAATGCATGAAAATTTTTG
CCTTTGGAATGATAAAATGGACTTGCCTTGGCTCACAATCGTCAATCTTTCTGATTGTAGTCCTAGTGACGTAAAGGATT
ATCTCGCTCGTTTCCCTAGTCGTAACCAGCTTGCTTTGTTGGCGCCAGAACAAGGTGAGTTAGCCGCCGCAGCGATGCGT
GCTGGCGTTCAAGACTATTTATTAATTCCCGTAGAAAGTGAGCAATTGCTCGCGTCTATTCATCGATTACGACGGTTAGA
GTTACCTGACTCTAGTTTGGTGGTATCGGCATCTGTCAGTCGGCAGTTGTTGATGCTCGCCCATCGCGCAGCAACCACTG
AAGCCAGCGTTCTATTACTGGGCGAAAGTGGTACAGGCAAAGAACCTCTCGCTCGTTATATTCACCGTCATTCTTCGCGT
TCACATAAACCTTTTATTGCGATTAATTGTGCTGCAATTCCAGAAAGTATCCTTGAGTCCGTATTGTTTGGGCACGTAAA
AGGCGCCTTTACAGGTGCAATTTGTGATAAGGCCGGGAAATTTGAGCAAGCCAATGGCGGTACGTTATTGCTCGATGAAA
TTGGTGAAATGCCTTTGACGTTGCAGGCGAAATTACTGCGAGTTTTGCAGGAAAGAGAAGTGGAAAGGCTGGGTGGGCAG
CATGCAATAGCGTTAGATATCAGGATAATTGCGTCTACTAATCGTGACTTAAGGCAGGCAGTAGAGCTCGGCCATTTCAG
AGAAGACTTATTTTATCGTTTAGATGTTTTACCGTTGAAAATTTCTCCTTTAAGAGATCGAAAGGCAGATATTTTGCCTC
TTGCTGAGCACTTCTTGGACTTATATCACCAGCCAGATACCACCAGTACTTGTTATTTTAGTGAGCACGCAAAGCAAGCC
CTTGTGTCCTATGATTGGCCCGGAAACGTAAGGGAATTAGAAAATTGTATCCAGCGGGCATTGGTGATGCGTCGTGGGCT
TGCAATACAAGCTGCCGATCTTGGCTTAAACATTCAGCTAGAAGTGCAGGCGGTTGAGCATCCAGAAGTGACTGATGGAC
TTAGGGCTTCAAAGCAGCAGGCGGAGTTCCAATATATTATCGACGTACTTAAGCGTTTCAATGGGCAACGTACCTTAAGT
GCACAGGCGTTAGGGATGACGACGAGAGCGTTAAGATATCGACTCGTACAAATGCGGGAAGCAGGGATTGATATTGAAAT
GTTATTAGAACAAGCGGGCCGCGCTGCTTAG

Protein sequence : 
MRSLSIRIEGLNLSADLICKIMHENFCLWNDKMDLPWLTIVNLSDCSPSDVKDYLARFPSRNQLALLAPEQGELAAAAMR
AGVQDYLLIPVESEQLLASIHRLRRLELPDSSLVVSASVSRQLLMLAHRAATTEASVLLLGESGTGKEPLARYIHRHSSR
SHKPFIAINCAAIPESILESVLFGHVKGAFTGAICDKAGKFEQANGGTLLLDEIGEMPLTLQAKLLRVLQEREVERLGGQ
HAIALDIRIIASTNRDLRQAVELGHFREDLFYRLDVLPLKISPLRDRKADILPLAEHFLDLYHQPDTTSTCYFSEHAKQA
LVSYDWPGNVRELENCIQRALVMRRGLAIQAADLGLNIQLEVQAVEHPEVTDGLRASKQQAEFQYIIDVLKRFNGQRTLS
AQALGMTTRALRYRLVQMREAGIDIEMLLEQAGRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 4e-42 42
hrpR AAT96216.1 HrpR Virulence T-PAI Protein 3e-43 41
hrpR AAT96162.1 HrpR Virulence T-PAI Protein 3e-43 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputw3181_0461 YP_961866.1 sigma-54 dependent trancsriptional regulator BAC0089 Protein 2e-56 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputw3181_0461 YP_961866.1 sigma-54 dependent trancsriptional regulator VFG1249 Protein 2e-80 49