Gene Information

Name : fliP (Sputw3181_0458)
Accession : YP_961863.1
Strain : Shewanella sp. W3-18-1
Genome accession: NC_008750
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 502819 - 503553 bp
Length : 735 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
ATGATAGTTCGGCTGCTTTTACTCTCTACTTTTTTGTTCGTTCCCCACGCTATAGCATCCGAAGGGCTGACCTTATTTAC
ATTGGACAGTGGAGAAAGTAGTCAAGCAGTTAACATTAAACTCGAAATTTTAGCACTCATGACAGCCATTAGCTTTTTGC
CTGTCATGTTAATGATGCTTACCAGTTTTACTCGAATTATCATTGTATTAGCCATCCTAAGGCAGGCTCTAGGATTACAA
CAAAGCCCGCCCAATAGGGTGCTGGTAGGAATAGCGCTAATACTCACTATCTTTATTATGCGTCCCGTGGGAGACAAGAT
TTATAAAGAGGCTTACCTGCCCTATGATCAGGGTAAGATCGAGTTAATGGAAGCCATTTCGATTGCAAAGGTCCCCTTAA
CTCGGTTTATGTTGGCACAGACGAGAGAGACAGATCTCGAACAAATGCTAAAAATCGCCAATGAACCTACACATATGAAA
ACGGCAGAGGAAGTGCCATTTTTTGTTCTGATGCCTGCGTTTGTATTGAGTGAACTCAAAACCGCCTTTCAAATTGGTTT
CTTAATCTTCTTGCCTTTCTTGGTTATCGATTTAGTGGTCGCAAGTGTGCTTATGTCGATGGGGATGATGATGCTATCGC
CCTTAATTATCTCACTCCCATTTAAGTTAATGATTTTTGTATTGGTCGATGGTTGGGCTATGACAGTCAGCACCTTAACT
GCCAGTTTTGGATAG

Protein sequence :
MIVRLLLLSTFLFVPHAIASEGLTLFTLDSGESSQAVNIKLEILALMTAISFLPVMLMMLTSFTRIIIVLAILRQALGLQ
QSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIELMEAISIAKVPLTRFMLAQTRETDLEQMLKIANEPTHMK
TAEEVPFFVLMPAFVLSELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMIFVLVDGWAMTVSTLT
ASFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-18 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-18 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-18 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-22 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-25 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-25 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-25 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-25 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-25 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-25 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-25 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 6e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_961863.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-46 61
fliP YP_961863.1 flagellar biosynthesis protein FliP VFG2016 Protein 5e-42 57
fliP YP_961863.1 flagellar biosynthesis protein FliP VFG2338 Protein 8e-44 56
fliP YP_961863.1 flagellar biosynthesis protein FliP VFG2494 Protein 7e-47 54
fliP YP_961863.1 flagellar biosynthesis protein FliP VFG0044 Protein 2e-21 41
fliP YP_961863.1 flagellar biosynthesis protein FliP VFG0394 Protein 2e-21 41