Gene Information

Name : Sputw3181_3508 (Sputw3181_3508)
Accession : YP_964874.1
Strain : Shewanella sp. W3-18-1
Genome accession: NC_008750
Putative virulence/resistance : Virulence
Product : response regulator receiver protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 3998748 - 3999359 bp
Length : 612 bp
Strand : -
Note : PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: she:Shewmr4_0637 two component transcriptional regulator, LuxR family

DNA sequence : 
ATGAGTCTTGCCTTACCTGTGTATTTAATCGATGACGATGACTCAGTGCGTCGTTCTTTGCGTTTTATGCTTGAAAGTTA
TGGCCTTAAGATCACCGACTTTGATAGCGCTGAAGCCTTTTTTACCGCCGTAGACTTAACACTACCGGGTTGTGCGCTAG
TCGATGTGCGTATGCCGGGTTTGAGTGGTCAGCAGTTGCATCTTGAATTAGTGGCAAAAAATAGTCCGCTAGCGGTGATT
TATCTCACTGGCCATGGCGATGTGCCAATGGCGGTAGATGCGCTTAAATTAGGTGCGGTGGATTTTTTCCAAAAGCCCGC
CGATGGCGCTAAGTTAGCCGAGGCGGTTGTCAAAGCGTTGGAACATACCAAGGCGCATCATCAAGACAATCAGTATCTTG
AGACTTATCAAGCGCTCACGCCAAGGGAGCGGGAAATACTCAACCTGATTGCCCAAGGCCTGAAGAACCAAGAGATCGCC
GATAGTCTCTGTATTGCCATGCGCACGGTTGAGATCCACCGCGCCAATTTGATGAAAGGCATGCAAGTGGGATCGCTGGC
GGAAATGATGCTGATTTACAGTCGGATCGCCGAACGCCTGCGTCTCGAATAA

Protein sequence : 
MSLALPVYLIDDDDSVRRSLRFMLESYGLKITDFDSAEAFFTAVDLTLPGCALVDVRMPGLSGQQLHLELVAKNSPLAVI
YLTGHGDVPMAVDALKLGAVDFFQKPADGAKLAEAVVKALEHTKAHHQDNQYLETYQALTPREREILNLIAQGLKNQEIA
DSLCIAMRTVEIHRANLMKGMQVGSLAEMMLIYSRIAERLRLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 3e-33 45
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 3e-33 45
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 3e-33 45
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 2e-33 45
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 2e-33 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputw3181_3508 YP_964874.1 response regulator receiver protein VFG0488 Protein 6e-34 45