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Name : smpB (Sputw3181_2876) Accession : YP_964247.1 Strain : Shewanella sp. W3-18-1 Genome accession: NC_008750 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 3307175 - 3307666 bp Length : 492 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTAAAGAAAAAATCAAGCAAAGCCGCGCCTGCGACTATCGCACGTAATAAGCGCGCAACCTTCGAATACCGATTCGA AGAGAAAATGGAAGCTGGTCTATCCCTTATGGGATGGGAAGTGAAATCTATCCGTATGGGTAAGGTCAACTTGTCCGACT GTTACGTATTCCTGAAAAATGGCGAAGCCTTTATGCATGGCTGCACCATTATTCCCTTGAATACGGCATCGACACACGTT GTCTGCGATCCCCTGCGTTTGAAAAAACTGCTACTCAGCCGTAAAGAGCTAGATAAACTAGCTGGCTTAGTTGAGCGCCA AGGCTACTCTATTATTCCTATCTCAATGTACTGGCGTAAAGGTGCATGGGTGAAAGTGGAAATTGGCCTAGGTAAAGGTA AGAAAGATCACGATAAGCGCGAAGATACTAAAGCGCGTGAATGGGAAGTTGAAAAAGCCCGCGTGATGAAAAAAGAAAAA ACGCACGGATAA Protein sequence : MVKKKSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKNGEAFMHGCTIIPLNTASTHV VCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRKGAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKKEK THG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-32 | 57 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-12 | 41 |
