Gene Information

Name : Sputw3181_1504 (Sputw3181_1504)
Accession : YP_962896.1
Strain : Shewanella sp. W3-18-1
Genome accession: NC_008750
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1703330 - 1704709 bp
Length : 1380 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_1424 two component, sigma54 specific, tr

DNA sequence : 
ATGAATGCGCCCAATTCAATCCAAGACTATTCAGTACTTATCATCGATGATGAGCCACATATAGGCACCGTCTTAGTGCA
ATTGTTCGAACTAGAAGGTATTAAAGCCATCACTCGCACTGAACCTAAAGATATTGCCAAACTGCTTGATAAAGATTGGG
CCGGAGTCGTGATCTCCGATGTGAATATGCCACAGCTTGATGGCATTAGTCTTATGCAACAAATTCGCCAGCAAGATCCT
GATTTACCAGTAGTCCTACTCACAGGTTTTGGCGATATCGCTATGGCAGTCAATGCCTTAAAGCAAGGCGCTTACGATTT
TCTCGAAAAACCCTTTAATAATGAACATATGCTTGATGTGGTTAAACGTGCCTTAGATAAACGCAGTTTGACCCTAGAAA
ACCGTAAACTAAAAAAAGAGCTAGAGAGCCAAAGCGTTCCCGGGCCACGTATTTTGGGGCACAGTGTTGGCATTAACCGT
ATGCGCCATATTATTGAACAAGTCATCAATACGCCTGCTGACGTATTGATTGAAGGAGAAACAGGCACAGGTAAAGAACT
CGTTGCCCGTTATCTGCACGATCACAGCAACCGTAACCAAGCCAACTTTGTGGCCATTAACTGCGGCGCGATCCCTGAAA
ATCTTATCGAAAGTGAACTCTTTGGCGCCGAAGCTGGTGCCTTTACGGGGGTCGATAAAATGCGGGTGGGTAAGTTTGAA
TACGCTAATGGCGGCACATTGTTCTTAGATGAAATTGAAAGCACGCCGTTATCGCTCCAAGTAAAACTACTACGAGTATT
AGAAGATCGCAAAGTGGAACGCTTAGGTTCCAATAAAAGCATCAATTTAGATATACGTGTGATTGCCGCCACCAAAGTTG
ATTTAAAAAGCCTGTGTGATACTGGGGAGTTTCGTCAAGATTTACTCTACCGCTTGAATCTAGTGACGGTTCCCATTCCG
CCACTAAGGGATCGACGTGAAGATATTCCCCTACTCTTTTTACATTTTGCGCGAGTCGCATCGGCTCGATATCACAAAGC
ACTTATCGCGTTAAATGCTGAGCAAAATGCCATACTCACCTCACACGACTGGCCGGGCAATGTACGTGAATTACGTAATC
TGGCTGAACGCTATGTACTACTCGGTGGAGAAGCCGCTTTTGCCGGTTCACTTGGCAATACACCAAGTCTGCACTCCAGC
ATGTCTTTACTGCAACGGGTCGAGTTTTTCGAGCGTGTACTGATTGAGGAAGCCTTAAGCCACAACAAAGGCAGTATCAA
ACTGACGATGGAACAGCTTGAACTCCCTCGCAAAACCTTATATGACAAGATGCGCAAATATGATTTAGACCGCAAGCAGT
ATGTAAATTCAGAGGACTAG

Protein sequence : 
MNAPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKAITRTEPKDIAKLLDKDWAGVVISDVNMPQLDGISLMQQIRQQDP
DLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSLTLENRKLKKELESQSVPGPRILGHSVGINR
MRHIIEQVINTPADVLIEGETGTGKELVARYLHDHSNRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKMRVGKFE
YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSINLDIRVIAATKVDLKSLCDTGEFRQDLLYRLNLVTVPIP
PLRDRREDIPLLFLHFARVASARYHKALIALNAEQNAILTSHDWPGNVRELRNLAERYVLLGGEAAFAGSLGNTPSLHSS
MSLLQRVEFFERVLIEEALSHNKGSIKLTMEQLELPRKTLYDKMRKYDLDRKQYVNSED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS NP_791207.1 type III transcriptional regulator HrpS Virulence Hrp PAI Protein 5e-52 41
hrpS AAC34753.1 HrpS Virulence Hrp PAI Protein 5e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputw3181_1504 YP_962896.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 5e-70 42
Sputw3181_1504 YP_962896.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0467 Protein 9e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputw3181_1504 YP_962896.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1249 Protein 1e-63 42