Gene Information

Name : Sputw3181_1087 (Sputw3181_1087)
Accession : YP_962491.1
Strain : Shewanella sp. W3-18-1
Genome accession: NC_008750
Putative virulence/resistance : Virulence
Product : N-6 DNA methylase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG0286
EC number : -
Position : 1234656 - 1237079 bp
Length : 2424 bp
Strand : +
Note : PFAM: N-6 DNA methylase; KEGG: shm:Shewmr7_1782 N-6 DNA methylase

DNA sequence :
ATGGATCATAGTGTACATAACAAGCTCATCTCATTTATTTGGAATATTGCCGACGACTGTTTACGGGATGTGTACGTTCG
CGGTAAGTACCGTGATGTGATTTTACCTATGGTGGTATTACGACGTTTAGATACGTTACTTGAACCCACCAAAGAAGCGG
TGCTTGAAGAGGTAAAGTTCCAAAAAGAAGAGATGCAAGCCACGGAGCTTGATGATGAACCATTGAAGGCGGCCAGTGGC
TATGTCTTTTACAATACATCTAAATGGACGCTGAAATCCCTATTCAACACCGCAACAAATAACCAACAGATATTACTCGC
CAACTTTGAAGAGTACCTGCTTGGCTTTAGCGATAATGTTAAAGAGATCATTGAATGCTTTAACCTTAAATCGCAAATTC
GTCACATGGCCTCAAAGCAAGTCCTTCTTGATGTCGTCGAAAAGTTTGTTTCCCCTTACATCAATTTAACTCATGAAACG
GTCGAAGACCCGGATGGCAACAAGATGCCAGCCCTTACTAACCTGGGTATGGGTTATGTGTTCGAAGAGTTGATCCGCAA
GTTCAACGAAGAAAACAATGAAGAAGCAGGCGAACACTTTACGCCACGTGAAGTTATTGAACTGATGACGCACCTGGTGT
TTGACCCTGTGAAAGACCAGTTGCCGCTTACCATGACAGTATATGATCCTGCGTGTGGTAGTGGTGGTATGTTGACTGAA
TCTCAAAACTTCATTGAAGAGAAATACCCTAACGACAGCCGTGATGTTTACCTTTACGGCAAAGAGATCAACGACGAGAC
CTACGCGATTTGTAAATCGGACATGATGATCAAAGGCAACAACCCTGAGAACATCAAAGTAGGCTCAACCTTGTCTACCG
ATGAGTTCGCGGCTTCACGCTTTGACTTTATGTTGTCTAACCCGCCATATGGTAAGAGTTGGGCGTCTGAACAGAAGCAC
ATTAAAGACGGCAGTGATGTGATTGACCCGCGTTTTAAGGTTAGCCTGAAAGACTATTGGGGAAATCTCGAAGTGGTGGA
TGCCACGCCACGTTCAAGTGATGGCCAGCTGCTCTTCTTAATGGAAATGGTCAACAAGATGAAAGATCCAAGCGTAAGCC
CATTAGGCAGCCGGATTGCTTCTGTTCATAATGGCTCATCGCTCTTTACCGGTGATGCGGGCGGTGGCGAAAGTAACATT
CGTCGCTTCATCATTGAAAACGACATGCTAGATGCCATCGTTCAGTTACCTAATAACCTGTTCTATAACACCGGCATTAC
CACTTACATTTGGGTGTTGAACAACAATAAACCCGAGGCACGTAAAGGTAAGGTGCAACTGATTGATGCTAGCTTGCTAT
ACCGTAAGTTGCGTAAGAACTTAGGTAACAAAAACTGCGAATTTGCGCCTGCGCACATCACGGAAATTACCGATACTTAC
CTCGCGTGTGTGGGCGTTGAAAGAGCACTTGATGCAAACAATGATCCTGTTGGCATAGCCAGCAAAGTGTTTAGCAATGA
CGACTTTGGCTATTACAAAGTCACTATCGAGCGCCCAGACCGCCGAAGAGCCAAGTTCACTCAAGACGCAATAGCCCCAC
TGCGTTTTGATAAGCAGCTTAGTGAAGTGATGGAGTACGTGTACGCAGAGCACGGCGAACGTGTTTACGAAAAAACTGGC
TATGGTACTGAAAAGAAAAAGAGCTTCTTGAAATCCATTGAGAAAGACATTCTTTCTTGGTGTGAAGATAACGACATCAG
TCTCAATGCCAAAGCTAAAGCAAAACTGCTCGATGTGAAACATTGGCTGGCGCTTAAAGCATTGCTTGAAACGGCAGAAA
CGCTGATGGCTGACATCGGTAGCATTGAATTTGATGACTTCAATAGTTTTAAAACCCAAGTTGATAAATCGCTAAAAGCC
CATGCTATTAAGCTTTCAGCACCTGAGAAAAATGCCATCCTGAACGCGGTGAGCTGGTATGACGAAACCGCCAAGAAAGT
GGTGAAAAAGATCGTTAAATTAACGGGTGATAAATTAAACGACCTGCTGGAGCGCTATGAGTGTGAAGTCGCTGACCTGC
CAGATTTTGGTTATTACCCCGTTCCTACAACAGAAGGCGGCAAAAAAGGCGAGTTCATTACTTACGAGACCAACTCAGAC
CTGCGTGACACAGAATCTGTCCCACTGAAGCAAAGCATTTACCTGTACTTCCTAGACGAAGTGAAGCCTCATGTTGATGA
AGCATGGATAAACCTAGATACGGTAAAAATTGGCTATGAAATCAGCTTCAATAAGTATTTCTACCGTCATAAACCGCTGC
GTAGTTTAGAGGAGGTCGCAACCGATATTATCAACCTAGAACAAAAAGCCGAAGGTCTTATTGCGCAGATATTGGGCGTC
GCAGTAGAAAAGGTTCAGGGGTAA

Protein sequence :
MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQATELDDEPLKAASG
YVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHET
VEDPDGNKMPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTE
SQNFIEEKYPNDSRDVYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASRFDFMLSNPPYGKSWASEQKH
IKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNI
RRFIIENDMLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPAHITEITDTY
LACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLRFDKQLSEVMEYVYAEHGERVYEKTG
YGTEKKKSFLKSIEKDILSWCEDNDISLNAKAKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKA
HAIKLSAPEKNAILNAVSWYDETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGEFITYETNSD
LRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILGV
AVEKVQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1769 NP_231404.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 78
VC0395_A1367 YP_001217310.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 78
VPI2_0017c ACA01834.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 77

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputw3181_1087 YP_962491.1 N-6 DNA methylase VFG1102 Protein 0.0 78