Gene Information

Name : smpB (Maqu_3370)
Accession : YP_960628.1
Strain : Marinobacter aquaeolei VT8
Genome accession: NC_008740
Putative virulence/resistance : Unknown
Product : SsrA-binding protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0691
EC number : -
Position : 3728407 - 3728889 bp
Length : 483 bp
Strand : +
Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca

DNA sequence :
ATGAGCAAGAAGAAAGCAAACGCCCCAACCAGCAACACCATCGCCCTGAACAAGAAGGCGAAGCACGAGTACCATATTGA
GGAGCGCTTCGAGGCTGGCCTGGCCCTGCTTGGCTGGGAAGTGAAGTCGTTGCGTGCCGGTAAGGCACAACTGGTTGATG
CCTATGTACTGCTGAAGGATGGCGAAGCCTGGCTGCTGGGCTCCCACATCACGCCTCTGAATACGGCCTCTACCCATGTG
ATTGCAGACCCGACCCGCACTCGCAAACTGCTACTGCACGCCAAGGAAATCGCAAAGATTGTCGGCCAGGTGAATCAGGC
GGGTTACACCTGCATTCCCCTCGCCCTTTACTGGAAAAAGAACAAGGTGAAATGCGAGATCGCCCTGGTGAAAGGCAAGA
AGCTGTTCGACAAACGCGCTACCGAGAAAGAGCGTGACTGGAACCGCCAGAAACAGCGCATCATGCGCGAGGCCAACACC
TGA

Protein sequence :
MSKKKANAPTSNTIALNKKAKHEYHIEERFEAGLALLGWEVKSLRAGKAQLVDAYVLLKDGEAWLLGSHITPLNTASTHV
IADPTRTRKLLLHAKEIAKIVGQVNQAGYTCIPLALYWKKNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRIMREANT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
smpB NP_230495.1 SsrA-binding protein Not tested VPI-1 Protein 2e-39 57
smpB YP_001800894.1 SsrA-binding protein Not tested Not named Protein 4e-26 46
unnamed AET14351.1 SsrA-binding protein Not tested SaPI68111 Protein 2e-24 43