Gene Information

Name : lysS (Mvan_3330)
Accession : YP_954133.1
Strain : Mycobacterium vanbaalenii PYR-1
Genome accession: NC_008726
Putative virulence/resistance : Unknown
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : 6.1.1.6
Position : 3541858 - 3545160 bp
Length : 3303 bp
Strand : +
Note : catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA

DNA sequence :
ATGACGCCAACCAGCCTCGCCCGGGCCCGTCCGACGTCCAGCCACCGCTGGGTGCCCGCGGCCGCCGGGTGGATCGTGGG
GGTCATCGCGACGCTGTCGCTGCTGGCCAGCGTCTCGCCGCTGGTCCGGTCCCTGATCCGGGTCCCGCGCGAGTGGGTCG
ACGACTACATCTTCAACTTCCCCGACACCAGTTTCGCGTGGGCGTTCGTGCTGGCGCTGCTCGCCGCCGCCCTGGCCGCG
CGCAAACGCATCGCCTGGTGGATCCTCGTCGGCTACATGATCGCGGCGGCCGGTTGGAACATCGCCGGTCTGGCCGAGGG
CCGAGAACGCTGGTTCGCCGAGGTCGGCGAGGTCATCGGTCTGGCGTTTCACCTGGCCGCCATCGCGTTCCTGCTGCTTG
CCCGCAAGGAGTTCTGGGCCAGGGTGCGCCGCGGCGCGTTGCTCAAGGCCGCCGCGACGCTGGTGGCGAGCATGGCCGTC
GGCACACTCATCGGCTGGGGTCTGCTCGAACTGTTCCCCGGATCCCTGGCCCGGTCGGACCGGTTCCTGTACGCGCTGAA
CCGGGTCAGCGCGTTCGCCGGGGCCGACGCCGCGTCGTTCAGCGGTCATCCGCACGTGTTCGTCAACGCGCTGCTCGGCC
TGTTCGGGGCGGTGGCCCTGATGGTCACGGCGATCGTGCTGTTCCAGTCGCAGCGCGCGGACAACGCGCTCACCGGTGAG
GACGAGTCGGCGATCCGCGGTCTGCTCGAGCTGTACGGCAAGAACGACTCGCTGGGCTATTTCGCGACCCGGCGCGACAA
GGCCGTGGTGTTCGCGCCCAGCGGCCGCGCCGCGATCACCTACCGCGTGGAGGTCGGGGTGTGTCTGGCCAGCGGCGACC
CGGTCGGTGACCCCAGGTCCTGGCCGCAGGCGATCGACGCGTGGCTCAAGCTGTGCCAGGCCTACGGCTGGGCGCCGGGC
GTGATGGGCGCGAGCGCAGCTGGCGCACAAGCCTTTCGAGAGGCCGGGCTCAACGCCCTGCAACTCGGCGACGAGGCGAT
CCTGCATCCGGAGGACTTCCGGTTGTCCGGGCCCGACATGCGGGCCGTCCGGCAGGCGGTGACCCGCGCCCGGCGTGCCG
GCGCCACCGTGCGGATCCGCAGGCACCGGGAGCTGCCCGCCGACGAGATGGCCGCGGTCATCGAGCGGGCCGATGCCTGG
CGCGACACCGACGACGAGCGCGGGTTCTCGATGGCGCTGGGGCGGCTCGGCGATCCCGCCGACGGGGACTGCCTGCTGGT
GGAGGCGGTGCAGGCCGACCAGGTGGTCGCGATGCTGTCGCTGGTGCCATGGGGCGGCAACGGAGTGTCCCTCGATCTGA
TGCGCCGTTCCCCGCAATCCCCCAACGGCACCATCGAATTGATGGTCAGCGAGCTGTGCATGCAGTCCGAGGACATCGGC
ATCACCCGGATCTCGTTGAATTTCGCGATGTTCCGCTCGGCCTTCGAGCAGGGCGCCCAACTGGGCGCGGGTCCGGTGGC
AAGGCTGTGGCGGTGGCTGCTGGTGTTCTTCTCGCGCTGGTGGCAGCTGGAGACCCTGTACCGGTCGAACATGAAGTACC
AGCCCGAATGGGTTCCCCGGTACGCGTGCTACGACGACGCCAGGCTGGTGCCCCGCGTCGGCGTGGCCTCTGTGATCGCC
GAAGGCTTTCTCGTGCTGCCGTTCTCGCGGCGCCATGAACAGCCGCACACCGGCCACCACATCGCCGCCCCCGGAACACT
GGTGGCCACCGGCCTGTTGCACAGCGACGGCACCGCACCCGACGGGATGGGACTGCAGGCCGACCTGGCCGACGACGACC
AGCCGAGGCTGCCCGAGCAGGTCCGGGTCAGGATGGCCAAACTCAAGGCGCTTCAAGCCCAGGGGGTCGACGCGTATCCG
GTGGCCAACCCGCCCAGCCACACCGTCGCGCAGGCTCTGGCCGCCGAGGACGGCGCAGACGTCGCGGTCGCGGGCCGGGT
GCTGCGGTCACGCGACTACGGCGGCGTGCTGTTCGCCCAGCTCCGCGACTGGTCAGGCGAAACCCAACTGGTGCTGGACA
ATTCGCTGCTCGCCGACGGCAGCACCGCGGACTTCACCCGGACCATCGACCTCGGTGACCTGATCGAGGTCACGGGCACG
ATGGGCCGCAGCCGGTCGGGCAAGTGGTCACTGCTGGTCAGCGGCTGGCGGCTGATCGGAAAGTGCCTGCGCCCGTTACC
GGACAAGTGGAAGGGCCTGACCGATCAGGAGGCGCGGGTCCGCGCCCGCTATGTCGATCTCGCGGTCAACACCGATGCCC
GGGAGCTGATCCGGGCCCGCAGCGCGGTGCTGCACGCGATCCGCGAGACCCTGGTCGCCAAAGACTTCCTGGAAGTCGAG
ACGCCGATCCTGCAACAGATTCACGGCGGTGCGAATGCCCGGCCCTTCCTGACCCACATCAACGCCTACGACCTCGACCT
GTATCTGCGGATCGCGCCCGAGCTGTATCTGAAGCGGTTGTGCGTCGGTGGTGTGGAGCGGGTGTTCGAACTCGGACGCG
CCTTCCGCAACGAGGGTGTCGACTTCAGCCACAACCCGGAGTTCACGCTGCTGGAGGCGTATCAGGCGCACGCCGACTAC
CACGTGTGGATCGACGGTTGCCGGGAGCTGATCCAGAACGCCGCGCAGGCGGCCAACGGTGCGCAGGTGTTCATGCGGCC
CCGTGCGGACGGGGTTCTTGAGCCCGTCGACATCTCCGGTCCGTGGACGGTCAAGACCGTGCACGGCGCGGTGTCCGAGG
CGCTCGGCGAGCAGATCGGCCCGGACACCGATCTGGCCACGTTGCGCCTGCTCTGCGACCGCGCGGGCATTCCCTACCTG
ACGCACTGGGACGCCGGAGCGGTGGTGCTCGAGCTGTACGAGCACCTCGTCGAGGACCAGACCCGGGAACCGACGTTCTA
CAAGGACTTCCCCACCTCGGTCTCTCCGCTGACGCGGCCGCACCGCAGCATCCCCGGGGTGGCCGAGCGCTGGGACCTGG
TGGCCTGGGGTGTCGAACTCGGCACCGCCTACAGCGAGCTCACCGATCCGGTCGAGCAGCGCCGCCGTCTGCAGGAGCAG
TCGCTGCTCGCCGCGGGCGGTGACCCGGAAGCGATGGAGCTCGACGAGGACTTCCTGCAGGCGATGGAGTACGCGATGCC
TCCGACGGGCGGGCTGGGGATGGGCGTGGACCGGGTGGTCATGCTCATCACCGGGCGCAGCATCCGCGAGACCCTGCCCT
TTCCGCTGGCAAAACCGCGGTAA

Protein sequence :
MTPTSLARARPTSSHRWVPAAAGWIVGVIATLSLLASVSPLVRSLIRVPREWVDDYIFNFPDTSFAWAFVLALLAAALAA
RKRIAWWILVGYMIAAAGWNIAGLAEGRERWFAEVGEVIGLAFHLAAIAFLLLARKEFWARVRRGALLKAAATLVASMAV
GTLIGWGLLELFPGSLARSDRFLYALNRVSAFAGADAASFSGHPHVFVNALLGLFGAVALMVTAIVLFQSQRADNALTGE
DESAIRGLLELYGKNDSLGYFATRRDKAVVFAPSGRAAITYRVEVGVCLASGDPVGDPRSWPQAIDAWLKLCQAYGWAPG
VMGASAAGAQAFREAGLNALQLGDEAILHPEDFRLSGPDMRAVRQAVTRARRAGATVRIRRHRELPADEMAAVIERADAW
RDTDDERGFSMALGRLGDPADGDCLLVEAVQADQVVAMLSLVPWGGNGVSLDLMRRSPQSPNGTIELMVSELCMQSEDIG
ITRISLNFAMFRSAFEQGAQLGAGPVARLWRWLLVFFSRWWQLETLYRSNMKYQPEWVPRYACYDDARLVPRVGVASVIA
EGFLVLPFSRRHEQPHTGHHIAAPGTLVATGLLHSDGTAPDGMGLQADLADDDQPRLPEQVRVRMAKLKALQAQGVDAYP
VANPPSHTVAQALAAEDGADVAVAGRVLRSRDYGGVLFAQLRDWSGETQLVLDNSLLADGSTADFTRTIDLGDLIEVTGT
MGRSRSGKWSLLVSGWRLIGKCLRPLPDKWKGLTDQEARVRARYVDLAVNTDARELIRARSAVLHAIRETLVAKDFLEVE
TPILQQIHGGANARPFLTHINAYDLDLYLRIAPELYLKRLCVGGVERVFELGRAFRNEGVDFSHNPEFTLLEAYQAHADY
HVWIDGCRELIQNAAQAANGAQVFMRPRADGVLEPVDISGPWTVKTVHGAVSEALGEQIGPDTDLATLRLLCDRAGIPYL
THWDAGAVVLELYEHLVEDQTREPTFYKDFPTSVSPLTRPHRSIPGVAERWDLVAWGVELGTAYSELTDPVEQRRRLQEQ
SLLAAGGDPEAMELDEDFLQAMEYAMPPTGGLGMGVDRVVMLITGRSIRETLPFPLAKPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lysS1 YP_005686365.1 lysyl-tRNA synthetase Not tested PiCp 7 Protein 2e-153 42
lysS1 YP_005682181.1 lysyl-tRNA synthetase Not tested PiCp 7 Protein 6e-153 42
lysS1 YP_005684273.1 lysyl-tRNA synthetase Not tested PiCp 7 Protein 2e-153 42
lysX YP_003784331.1 lysyl-tRNA synthetase Not tested PiCp 7 Protein 2e-153 42