Gene Information

Name : AAur_3270 (AAur_3270)
Accession : YP_948966.1
Strain : Arthrobacter aurescens TC1
Genome accession: NC_008711
Putative virulence/resistance : Virulence
Product : ABC-type Mn2+/Zn2+/Fe2+ transport system, permease component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3594295 - 3595122 bp
Length : 828 bp
Strand : -
Note : identified by match to protein family HMM PF00950; match to protein family HMM PF01032

DNA sequence : 
ATGGTCCGGGCGCTTGCAACTACGGCCATCGCCGCCGTGGTCTGCGCGGTCCTGAGCTGCTGGCTCGTCCTGATCGGCTG
GTCCCTCATGGGCGACGCCGTCTCGCACGCGGTGCTTCCCGGCGTCGTCCTCGCGTACATCGTGGGTGCGCCCTTCGCGC
TGGGTGCGTTGGTGTTCGCGCTGATCGCGGTGACGTTGATCGGGGTGGTACGGAATACCAGCCGCGTGAAGGAAGACGCG
GCGATCGGCATCGTGTTCACCTCGCTGTTCGCGCTGGGCCTGGTGCTGATCTCCGTGACCCCGAGCCAGACTGACTTGAA
CCACATCATCTTCGGGAACCTGCTGGGCGTCAGCATCCCGGACCTCATCCAGGTGGTGGTCCTGGGCGTCGTGGCGTTTG
CGATCCTGATCCTCAAACGACGCGACCTCACGCTCTACGCGTTTGACCCCACGCACGCCCACGCCATCGGCTTGTCACCC
AAACGGCTGGGCGCCCTGCTCCTGGGCCTGCTGGCGCTGACCTCCGTGGTAGCCCTGCAGACCGTGGGTGTGGTGTTGGT
GGTGGCCATGCTGATCATCCCGGGTGCCACGGCCTACCTGCTGACCGACCGTTTTTCCCGGATGCTGGTGATTGCGCCCG
TGATCTCGGTGGTGTGCTCCGTCGCCGGCATCTACCTCAGTTATTACCTGGACACGGCGTCGGGGGCCATGGTGGTGCTC
ACTCAAGGCGTGGTGTTCGCCGTCGTGTATTTGTTCAGCCCACGGCAGGGGCTCATCGGTACGCGGCTGGCGAAGGCCCG
CCGGAAGCGGGCCGTCGCCACGGTGTAG

Protein sequence : 
MVRALATTAIAAVVCAVLSCWLVLIGWSLMGDAVSHAVLPGVVLAYIVGAPFALGALVFALIAVTLIGVVRNTSRVKEDA
AIGIVFTSLFALGLVLISVTPSQTDLNHIIFGNLLGVSIPDLIQVVVLGVVAFAILILKRRDLTLYAFDPTHAHAIGLSP
KRLGALLLGLLALTSVVALQTVGVVLVVAMLIIPGATAYLLTDRFSRMLVIAPVISVVCSVAGIYLSYYLDTASGAMVVL
TQGVVFAVVYLFSPRQGLIGTRLAKARRKRAVATV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-39 47
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-39 47
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-39 47
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-39 47
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-39 47
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-40 46
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-40 46
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-40 46
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-40 46
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-40 46
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-30 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-30 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AAur_3270 YP_948966.1 ABC-type Mn2+/Zn2+/Fe2+ transport system, permease component BAC0441 Protein 4e-41 49
AAur_3270 YP_948966.1 ABC-type Mn2+/Zn2+/Fe2+ transport system, permease component BAC0442 Protein 6e-39 48
AAur_3270 YP_948966.1 ABC-type Mn2+/Zn2+/Fe2+ transport system, permease component BAC0352 Protein 4e-39 47
AAur_3270 YP_948966.1 ABC-type Mn2+/Zn2+/Fe2+ transport system, permease component BAC0351 Protein 2e-40 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AAur_3270 YP_948966.1 ABC-type Mn2+/Zn2+/Fe2+ transport system, permease component VFG0528 Protein 4e-39 47
AAur_3270 YP_948966.1 ABC-type Mn2+/Zn2+/Fe2+ transport system, permease component VFG0527 Protein 2e-40 46