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Name : smpB (BT0033) Accession : YP_945048.1 Strain : Borrelia turicatae 91E135 Genome accession: NC_008710 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 30509 - 30958 bp Length : 450 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : GTGAGTATATTACTGCTTGAAAACAAAAAAGCAAGGTTCAATTACTTCATTGAAGATAAAATAAACTGTGGAATCATCTT AAAAGGAACTGAGGTTAAATCCATTAAATTAAAAAAATTTTCATTTAATGATAGCTTTGCCAGCATTAAAAAAGATGAAG TATGGCTTGAAAATTTACATATAGCAAAATATAAAGAAGGTAATATCTTCAATCACGAAGAAATAAGACGCAGAAAACTT CTTTTAACAAAAAAAGAAATACAAAAACTAAAAAAATTTAAAGAAAAAGAAGGATACACATTAGTTCCTATCTCGATTTA TCTGAAAAATTCATTAATAAAAGTAGAACTTGGGGTATGTAAAGGAAAAAAATTATTTGATAAAAGAGAAGTGTTAAAAC AAAAAAGCATAAAAAAAGATTTAAATCGTGAGATCAAACAATATAGATAA Protein sequence : MSILLLENKKARFNYFIEDKINCGIILKGTEVKSIKLKKFSFNDSFASIKKDEVWLENLHIAKYKEGNIFNHEEIRRRKL LLTKKEIQKLKKFKEKEGYTLVPISIYLKNSLIKVELGVCKGKKLFDKREVLKQKSIKKDLNREIKQYR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-26 | 52 |
