Gene Information

Name : Ping_3562 (Ping_3562)
Accession : YP_944844.1
Strain : Psychromonas ingrahamii 37
Genome accession: NC_008709
Putative virulence/resistance : Virulence
Product : ATPase, FliI/YscN family protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.15
Position : 4380175 - 4381485 bp
Length : 1311 bp
Strand : -
Note : KEGG: vpa:VPA1533 putative flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase

DNA sequence : 
ATGAACTTGTTTTCTGGCAGCACTATTACGGATGTACCGATTGCGACCCTGACAGGAAAGGTTATTAATGCCAATAACCA
GCTGATTGTTGCCGAAGGCTGCCGATTCCGTTTGAATCAAGATTGTATTATTGAAACGGATGTTGAAAATATAAAAGTTA
AAGTGATTGGTATAAAACGTGCAAAAGCCTTCTTAATGCCATATCACCCGTTTTCGACTATTTATGTTGGTTCAAAAGTT
ATCCCGCTTAAAAAAACTGAGCACTATCATATTGATAACTCTTGGTTGGGGCGTGTATTAAATGCCCACGGCGAAGCGAT
TGATGACCTGCCATCTCCTCGGGGGATTGATACTATTACCCTGCGCAGCGCAGAAGCCATCAATATCTTAAAAAAGAAAC
CTATCAGTGAGCCTTTCGATGTGGGCATAAAATCGATTAATGGTTTATTAACGCTTGCTAAAGGGCAACGTGTTGGTTTG
GTTGCCGGCAGTGGTGTTGGTAAGTCTGTTCTGATGGGGATGATCACTAAATTCTCAGAAGCTGATGTGGTTGTAGTTGG
GCTGATAGGAGAAAGAAACAGAGAAGTTCGGGAATTTATTGAAAAAAATATTGGTGCGGAAGGTTTAAAAAAATCCGTAG
TGATTGCAGCGCCAGCGGATCAATCACCTCTGATGCGTATTCAGGCCACCGAATTGTGCCATTCTGTGGCGGAATATTAT
CGGGACAAAGGCGCTAACGTTTTACTGCTGGTGGACTCCTTAACACGTTACGCCATGGCGCAACGTGAAGTGGCAATTTC
TCTGGGGGAGCTGCCTGCCATCAAGGGTTATCCTCCCTCTGTTTTTTCATTTATCCCTCCCTTATTGGAGCGATCCGGAA
ATGGTCATGAAAATGCCGGCACCATGACCGCTATTTACACCATTTTGTCCGAGGGGGATGAGGACTATGATCCGGTTGTT
GATACGGCAAAAGCGATTCTGGACGGCCATATAGTACTATCTAAAGAACTTGCCCAGCGAGGGCAGTTTCCGGCCGTGGA
TATCGAAAAATCCATCAGCCGCTGTATGGATGCCGTGGTAAGTGAACCTCATCTGCAAATAGCAAGACAATGCAAACGCC
TTTACAGTATGTATAACAAGGCCAAAGACTTGATTGCATTAGGAGGTTACCAGCAGGGCAATGATCCGGAACTTGATGAA
GCAATCCAAAAAAATCCAATCATAGAAAAATTACTGATGCAAAATACCATTCAATATGTCAGCTTTGAAGAAAGCTGCCA
ACAATTAGCACTTATTTTTAAAGGAAAGTAA

Protein sequence : 
MNLFSGSTITDVPIATLTGKVINANNQLIVAEGCRFRLNQDCIIETDVENIKVKVIGIKRAKAFLMPYHPFSTIYVGSKV
IPLKKTEHYHIDNSWLGRVLNAHGEAIDDLPSPRGIDTITLRSAEAINILKKKPISEPFDVGIKSINGLLTLAKGQRVGL
VAGSGVGKSVLMGMITKFSEADVVVVGLIGERNREVREFIEKNIGAEGLKKSVVIAAPADQSPLMRIQATELCHSVAEYY
RDKGANVLLLVDSLTRYAMAQREVAISLGELPAIKGYPPSVFSFIPPLLERSGNGHENAGTMTAIYTILSEGDEDYDPVV
DTAKAILDGHIVLSKELAQRGQFPAVDIEKSISRCMDAVVSEPHLQIARQCKRLYSMYNKAKDLIALGGYQQGNDPELDE
AIQKNPIIEKLLMQNTIQYVSFEESCQQLALIFKGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06369.1 EscN Virulence LEE Protein 3e-64 42
escN AAL57542.1 EscN Virulence LEE Protein 3e-64 41
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-64 41
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-64 41
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-64 41
escN CAI43874.1 EscN protein Virulence LEE Protein 8e-65 41
escN AAC38383.1 EscN Virulence LEE Protein 1e-65 41
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-65 41
escN AAC31513.1 L0034 Virulence LEE Protein 1e-65 41
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-65 41
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-65 41
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-65 41
escN AAK26715.1 EscN Virulence LEE Protein 3e-64 41
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 6e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ping_3562 YP_944844.1 ATPase, FliI/YscN family protein VFG1254 Protein 4e-97 53
Ping_3562 YP_944844.1 ATPase, FliI/YscN family protein VFG2331 Protein 9e-91 46
Ping_3562 YP_944844.1 ATPase, FliI/YscN family protein VFG2499 Protein 6e-93 46
Ping_3562 YP_944844.1 ATPase, FliI/YscN family protein VFG0730 Protein 8e-66 41
Ping_3562 YP_944844.1 ATPase, FliI/YscN family protein VFG0812 Protein 8e-66 41