Gene Information

Name : Ping_2496 (Ping_2496)
Accession : YP_943821.1
Strain : Psychromonas ingrahamii 37
Genome accession: NC_008709
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3053581 - 3054807 bp
Length : 1227 bp
Strand : +
Note : PFAM: phage integrase family protein; KEGG: vvy:VV0817 phage integrase

DNA sequence : 
ATGGCAAAGATAATTAAGCCTCTTTCACCTACTGACGTTTCAACAGCAGAAACTAAAGAAAGTGAATATAACCTTAGCGA
TGGGAATGGCCTTTTCTTACGTGTTAAACCGGTTGGTAGTAAATTTTGGATCTTCAATTACCAACGTCCAATTACAAAAA
AACGTGCCAATCTAACTTTAGGCAGGTATCCAGATTTACCTCTAGCTAAAGCTCGAACAAAAGCAATTGAAGCAAGGGAA
CTACTAGCTGAAGGTATCGATCCAAAAGAACACCGTGATTCAACCTTAAAAGCTAAACAAGCAGAGCTCAGTAATACCCT
GCAAGTTGTCTTTGAAGATTGGTTTACCGTTAAAAAAACCAGCATTAAAGAATTAACCGCTAAAAAACTCAAACAACGCT
TAGATAAATACCTGTTAACTTATCTTGGCAAATTTCCTATTAGTGAAATCACCGCCCCACAGACGATCAAAATCCTGCAG
CCAGTTGCGAACCAGGGCAAGCTTGAAACCGTTGCCAGACTTTGCCGCAACCTTAATGAAATAATGGTGTTTGCAGTTAA
CACTGGCATCATTGAACACAATAAACTTGCCGGTATTGGCAAAGCGTTTGCAAACGCTCAAGTCACTAACCAAGCTTCAC
TGAAGCCAGAAGAGCTACCAGAGCTATTAACTGCCCTTAACTACGCTGATATAAAGCTTATCACTCGCTGTTTGATTGAA
TGGCAATTACATACAATGACCCGCCCTTCTGAAACAGCTGGGGCTCGCTGGGATGAAATTGATAGAGAAAATAAACTTTG
GCACATCCCAGCAGAGCGAATGAAAAAAGGCAGACCGCATACAGTCCTCCTAACAACACAAACACTCGCGCTGTTAGAGA
CAATTGATGCAATTACAGGTGACAGTGAATATATTTTCCCTGCTGACAAAACCAATAAAAAACACATTAATAAAGAAACA
GCAAACAAAGCATTACAAAGAATGGGCTTTAAAGGTCGCCAGACGTCACACGGATTACGTGCCCTGGCAAGTACCACCCT
GAATGAGCAAAACGTCTTCGATGCAGACGTGATTGAGGCCGCCCTTTCACACGTTGATAAAGTGAGAAGTGCTTACAACC
GCACTGACTACCTTGAGCGCCGCCGCGTACTAATGGGCTGCTGGAGTGATCATATTGAAGCAGCATCGAAAGGATCTAAC
TCAATCACAGGATTAAAGGGAATGTGA

Protein sequence : 
MAKIIKPLSPTDVSTAETKESEYNLSDGNGLFLRVKPVGSKFWIFNYQRPITKKRANLTLGRYPDLPLAKARTKAIEARE
LLAEGIDPKEHRDSTLKAKQAELSNTLQVVFEDWFTVKKTSIKELTAKKLKQRLDKYLLTYLGKFPISEITAPQTIKILQ
PVANQGKLETVARLCRNLNEIMVFAVNTGIIEHNKLAGIGKAFANAQVTNQASLKPEELPELLTALNYADIKLITRCLIE
WQLHTMTRPSETAGARWDEIDRENKLWHIPAERMKKGRPHTVLLTTQTLALLETIDAITGDSEYIFPADKTNKKHINKET
ANKALQRMGFKGRQTSHGLRALASTTLNEQNVFDADVIEAALSHVDKVRSAYNRTDYLERRRVLMGCWSDHIEAASKGSN
SITGLKGM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 3e-96 54
int AAK20773.1 integrase Not tested VPI Protein 5e-95 52
int AAK20803.1 integrase Not tested VPI Protein 5e-95 52
unnamed AAA82714.1 integrase Not tested VPI Protein 5e-95 52
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 6e-95 52
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 6e-95 52
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 9e-86 51
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 7e-86 51
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 7e-86 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ping_2496 YP_943821.1 phage integrase family protein VFG1092 Protein 3e-86 51